View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_low_23 (Length: 324)

Name: NF1159_low_23
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_low_23
NF1159_low_23
[»] chr5 (16 HSPs)
chr5 (38-267)||(15532200-15532429)
chr5 (40-267)||(15542384-15542611)
chr5 (41-282)||(33575091-33575331)
chr5 (38-282)||(22159746-22159992)
chr5 (40-281)||(11988864-11989108)
chr5 (38-282)||(14616429-14616672)
chr5 (38-282)||(34405850-34406094)
chr5 (36-142)||(26711462-26711567)
chr5 (36-142)||(26981199-26981304)
chr5 (38-282)||(7649942-7650185)
chr5 (136-285)||(26712439-26712589)
chr5 (136-285)||(26982177-26982327)
chr5 (38-156)||(2499762-2499882)
chr5 (35-156)||(21680602-21680724)
chr5 (47-105)||(14015916-14015974)
chr5 (69-105)||(32838166-32838202)
[»] chr2 (12 HSPs)
chr2 (38-267)||(31528406-31528635)
chr2 (38-285)||(13710069-13710315)
chr2 (44-282)||(40017981-40018218)
chr2 (48-282)||(31626551-31626784)
chr2 (38-282)||(16294900-16295143)
chr2 (38-282)||(23673345-23673588)
chr2 (38-282)||(36326928-36327171)
chr2 (38-285)||(32575685-32575933)
chr2 (38-129)||(24384925-24385018)
chr2 (38-105)||(33310935-33311003)
chr2 (38-147)||(29436003-29436113)
chr2 (38-104)||(40258905-40258971)
[»] chr6 (22 HSPs)
chr6 (38-282)||(13017189-13017433)
chr6 (38-282)||(22221726-22221967)
chr6 (38-282)||(22247561-22247802)
chr6 (38-282)||(14790620-14790864)
chr6 (36-282)||(14795648-14795894)
chr6 (148-282)||(30978321-30978455)
chr6 (69-282)||(15535058-15535270)
chr6 (46-282)||(19664674-19664909)
chr6 (164-282)||(16883677-16883795)
chr6 (38-282)||(1838475-1838720)
chr6 (162-282)||(20527286-20527407)
chr6 (108-280)||(15540574-15540744)
chr6 (221-282)||(27649104-27649165)
chr6 (38-282)||(32427303-32427544)
chr6 (204-282)||(32704421-32704498)
chr6 (164-239)||(11183962-11184037)
chr6 (228-283)||(12980682-12980737)
chr6 (230-283)||(12983571-12983624)
chr6 (37-104)||(19476295-19476362)
chr6 (38-102)||(2379522-2379586)
chr6 (38-105)||(7559850-7559920)
chr6 (238-270)||(7769588-7769620)
[»] chr3 (15 HSPs)
chr3 (38-282)||(22626312-22626554)
chr3 (38-282)||(11138570-11138812)
chr3 (38-285)||(39563510-39563757)
chr3 (38-147)||(20536333-20536445)
chr3 (38-282)||(13979488-13979730)
chr3 (223-282)||(46731496-46731555)
chr3 (38-148)||(46731589-46731699)
chr3 (38-156)||(19869223-19869343)
chr3 (95-148)||(35366510-35366562)
chr3 (160-239)||(50096825-50096904)
chr3 (38-105)||(50461303-50461371)
chr3 (38-105)||(3306144-3306213)
chr3 (38-104)||(48063791-48063857)
chr3 (36-84)||(25442611-25442659)
chr3 (37-105)||(28331064-28331132)
[»] scaffold0440 (1 HSPs)
scaffold0440 (38-282)||(9865-10109)
[»] chr7 (22 HSPs)
chr7 (38-282)||(23759609-23759852)
chr7 (44-279)||(11279496-11279730)
chr7 (38-282)||(36222309-36222552)
chr7 (36-282)||(294866-295108)
chr7 (38-282)||(33312996-33313239)
chr7 (46-282)||(46846320-46846556)
chr7 (38-282)||(3861907-3862150)
chr7 (38-282)||(6967149-6967393)
chr7 (38-282)||(17866353-17866597)
chr7 (38-282)||(24783410-24783654)
chr7 (161-282)||(23313383-23313504)
chr7 (145-282)||(17863202-17863338)
chr7 (165-282)||(23107989-23108106)
chr7 (232-282)||(36843131-36843181)
chr7 (221-282)||(9765803-9765864)
chr7 (38-153)||(17857880-17857996)
chr7 (38-105)||(6603732-6603800)
chr7 (37-105)||(8277271-8277339)
chr7 (38-156)||(3540924-3541042)
chr7 (38-105)||(16166023-16166090)
chr7 (38-104)||(37165917-37165983)
chr7 (38-125)||(38431669-38431757)
[»] chr4 (15 HSPs)
chr4 (38-230)||(12172025-12172218)
chr4 (37-282)||(2541886-2542129)
chr4 (38-282)||(647203-647447)
chr4 (38-282)||(650475-650719)
chr4 (46-282)||(26062698-26062937)
chr4 (231-282)||(11649426-11649477)
chr4 (236-282)||(26060589-26060635)
chr4 (38-105)||(24150961-24151028)
chr4 (38-105)||(38283247-38283314)
chr4 (161-214)||(11649328-11649382)
chr4 (37-154)||(19929126-19929243)
chr4 (47-105)||(29325110-29325168)
chr4 (47-105)||(40616583-40616641)
chr4 (38-105)||(18911793-18911861)
chr4 (38-156)||(33400075-33400195)
[»] scaffold0264 (1 HSPs)
scaffold0264 (37-282)||(24184-24426)
[»] chr8 (15 HSPs)
chr8 (38-271)||(12575300-12575532)
chr8 (38-285)||(14418464-14418707)
chr8 (203-282)||(13097022-13097100)
chr8 (161-282)||(41778865-41778985)
chr8 (231-282)||(41836415-41836466)
chr8 (38-156)||(9467309-9467429)
chr8 (223-271)||(44008308-44008356)
chr8 (232-271)||(14418396-14418435)
chr8 (38-103)||(10498016-10498081)
chr8 (37-105)||(16954060-16954129)
chr8 (36-104)||(31284962-31285030)
chr8 (47-105)||(18825665-18825723)
chr8 (161-214)||(41836317-41836371)
chr8 (37-125)||(453863-453952)
chr8 (40-104)||(44026858-44026922)
[»] chr1 (19 HSPs)
chr1 (38-282)||(10764921-10765165)
chr1 (38-282)||(13493264-13493508)
chr1 (39-282)||(1936628-1936873)
chr1 (37-282)||(13495989-13496233)
chr1 (161-285)||(34066343-34066467)
chr1 (37-282)||(32505856-32506098)
chr1 (161-285)||(16190301-16190424)
chr1 (38-282)||(39546244-39546486)
chr1 (160-239)||(8435280-8435359)
chr1 (232-282)||(27282301-27282351)
chr1 (38-147)||(49716625-49716735)
chr1 (230-282)||(22456684-22456736)
chr1 (47-105)||(45960522-45960580)
chr1 (245-282)||(49147899-49147936)
chr1 (41-125)||(49720129-49720214)
chr1 (230-270)||(15297345-15297385)
chr1 (238-270)||(21153269-21153301)
chr1 (38-105)||(31205126-31205194)
chr1 (38-125)||(34552438-34552525)
[»] scaffold0363 (2 HSPs)
scaffold0363 (38-285)||(11-254)
scaffold0363 (232-271)||(283-322)
[»] scaffold0567 (1 HSPs)
scaffold0567 (223-282)||(5995-6054)
[»] scaffold0068 (1 HSPs)
scaffold0068 (35-156)||(33727-33849)
[»] scaffold0352 (2 HSPs)
scaffold0352 (229-282)||(2794-2847)
scaffold0352 (46-148)||(2627-2728)
[»] scaffold0250 (1 HSPs)
scaffold0250 (38-105)||(19684-19752)
[»] scaffold0766 (1 HSPs)
scaffold0766 (47-133)||(3656-3739)
[»] scaffold0500 (1 HSPs)
scaffold0500 (223-282)||(2695-2754)
[»] scaffold0063 (1 HSPs)
scaffold0063 (223-282)||(7177-7236)
[»] scaffold0056 (1 HSPs)
scaffold0056 (38-111)||(65087-65160)


Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 267
Target Start/End: Original strand, 15532200 - 15532429
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15532200 tgatagatatttggcatgtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 15532299  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagttttt-agaaaattag 236  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| |    
T  15532300 aaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-g 15532398  T
Q  237 agagaagtatggttaagaccttcgaatcctc 267  Q
    ||||||||||||||||| |||||||||||||    
T  15532399 agagaagtatggttaagtccttcgaatcctc 15532429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 40 - 267
Target Start/End: Original strand, 15542384 - 15542611
Alignment:
Q  40 atagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaa 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  15542384 atagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaaa 15542483  T
Q  140 aggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagttttt-agaaaattagag 238  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| |||    
T  15542484 aggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gag 15542582  T
Q  239 agaagtatggttaagaccttcgaatcctc 267  Q
    ||||||||||||||| |||||||||||||    
T  15542583 agaagtatggttaagtccttcgaatcctc 15542611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 41 - 282
Target Start/End: Complemental strand, 33575331 - 33575091
Alignment:
Q  41 tagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaa 140  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||    
T  33575331 tagaaatttggcaagtgaaccaaattcaatcgaagtaataaaaaattcgttttcacgaggactgtatttaacttctatttagcaattttattattaaaaa 33575232  T
Q  141 ggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagag 240  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  33575231 ggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttagaaaatt-gagag 33575133  T
Q  241 aagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||| |||||||||||||||||  |||||||||    
T  33575132 aagtatggttaagtccttcgaatcctccgaagctctcctatg 33575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 22159992 - 22159746
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    ||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||    
T  22159992 tgatagatatttgacaagtgtaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttctttgtcaa 22159893  T
Q  138 aaaggatgtata--aatttatattagtgccctaggcagtt-gagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaat 233  Q
    ||||||||||||  || ||  |    |||||||||||||| || | | |||  |||  ||||| ||| | ||||||||||| |||| ||||| |||| ||    
T  22159892 aaaggatgtatattaaattcaaaggttgccctaggcagttggattggtttttataaagtaaacgtaaat-aaaacaataaa-aattggttttaagaatat 22159795  T
Q  234 tagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||| ||||||||||||||| |||||||||||| ||||||||||    
T  22159794 tagagagaaatatggttaagacctttgaatcctccgaagttctcctatg 22159746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 281
Target Start/End: Original strand, 11988864 - 11989108
Alignment:
Q  40 atagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttcta--cttagcaatttcattattaa 137  Q
    ||||||||||| |||||||| ||||||| |||||||||||||| |||||||||||||||| || ||  ||||||||||  |||||||||||||||| |||    
T  11988864 atagatatttgacaagtgaatcaaattcaatcgaagtaataaataattcgtttccacgagaaccgttcttaacttctatacttagcaatttcattagtaa 11988963  T
Q  138 aaaggatgtata--aatttatattagtgccctaggcagttgagttgattta-gtaacataaactaattaaaaacaataaagaattagtttttagaaaatt 234  Q
     ||||| |||||  || ||  ||  || ||||||||||||||||||||||  |||||||||||  ||||||||| |||||  ||| | ||||||||||||    
T  11988964 taaggacgtatattaaattcaatg-gtcccctaggcagttgagttgatttttgtaacataaacagattaaaaacgataaaagatt-gattttagaaaatt 11989061  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctat 281  Q
    ||||||||||| |||||||||||||||||||||| || |||||||||    
T  11989062 agagagaagtaaggttaagaccttcgaatcctccaaagttctcctat 11989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 14616429 - 14616672
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| |||||||||||||||||||  | |||||||||||||| |||||||| ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  14616429 tgatagagatttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 14616527  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    |||||||||||| |||||||||| | | ||||||| |||||||||| ||| ||||||||||| ||| ||||| ||||||| | ||  |||| |||| |||    
T  14616528 aaaaggatgtatgaatttatattgattaccctaggaagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttgattttaagaatatt 14616624  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||    
T  14616625 agagagaagtatggttaagacctttgaatcctccgaagttctcctatg 14616672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 34406094 - 34405850
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||||||| ||| ||| ||||| ||||| ||||| ||  |||| |||||||  |||||||| |||| |    
T  34406094 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggaccgttgttaatttctactcggcaatttctttatca 34405995  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| | | ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  34405994 aaaaggatgtataaatttatattgattgccctaggcagttgagttgttgt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatatt 34405898  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  34405897 agagagaagtatggttaagaccttcaaatcctctgaagttctcctatg 34405850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 26711462 - 26711567
Alignment:
Q  36 actgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 135  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  26711462 actgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatc 26711560  T
Q  136 aaaaagg 142  Q
    |||||||    
T  26711561 aaaaagg 26711567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 26981199 - 26981304
Alignment:
Q  36 actgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 135  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  26981199 actgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattatc 26981297  T
Q  136 aaaaagg 142  Q
    |||||||    
T  26981298 aaaaagg 26981304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 7649942 - 7650185
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| ||||| |||||||||||||  | |||||||||||||| |||||||| | ||||||||| ||  |||| ||||||| | ||||||| |||| |    
T  7649942 tgatagagatttgacaagtgaaccaaaa-ctatcgaagtaataaataaattcgtattcacgaggaccgttgttaatttctactcaacaatttctttatca 7650040  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||| ||| | ||||||||||| | ||  |||| |||| |||    
T  7650041 aaaaggatgtataaatttatattgattgccctaggcagttgagttg-ttttgtaacataaacgtaaat-aaaacaataaa-agttgcttttaagaatatt 7650137  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||| || ||||||| |||| |||| |||||    
T  7650138 agagagaagtatggttaagacatttgaatcctacgaagttcttctatg 7650185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 26712439 - 26712589
Alignment:
Q  136 aaaaaggatgtataaa-tttatattagtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaat 233  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||  ||||||||| | ||||  ||| | |||||||||||    
T  26712439 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagatt-ggttttagaaaat 26712537  T
Q  234 tagagagaagtatggttaagaccttcgaatcctccgaaattctcctatgata 285  Q
      |||||||| ||||||||| | ||||||||||||||   ||||||||||||    
T  26712538 ctgagagaagaatggttaagtctttcgaatcctccgacgctctcctatgata 26712589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 285
Target Start/End: Original strand, 26982177 - 26982327
Alignment:
Q  136 aaaaaggatgtataaa-tttatattagtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaat 233  Q
    ||||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||||||||  ||||||||| | ||||  ||| | |||||||||||    
T  26982177 aaaaaggatgtgtaaaatttatattagtgccctagacagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagatt-ggttttagaaaat 26982275  T
Q  234 tagagagaagtatggttaagaccttcgaatcctccgaaattctcctatgata 285  Q
      |||||||| ||||||||| | ||||||||||||||   ||||||||||||    
T  26982276 ctgagagaagaatggttaagtctttcgaatcctccgacgctctcctatgata 26982327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 2499762 - 2499882
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataa-aaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||    ||||||||| ||| ||| ||||| ||||||||||| ||  |||| ||||||||||||| ||| |||  |    
T  2499762 tgatagatatttggcaagtgtaccaaaagatatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 2499861  T
Q  137 aaaaggatgta-taaatttat 156  Q
     |||||||||| |||||||||    
T  2499862 taaaggatgtagtaaatttat 2499882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 156
Target Start/End: Complemental strand, 21680724 - 21680602
Alignment:
Q  35 cactgatagatatttggcaagtgaaccaaattcgatcgaagtaataa-aaaattcgtttccacgaggactgtatttaacttctacttagcaatttcatta 133  Q
    ||||||||||||||||||||||| ||||||  | ||||||||| ||| ||| || || ||||||||||| ||  |||| ||||||||||||| ||| |||    
T  21680724 cactgatagatatttggcaagtgtaccaaa-actatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaagttcgtta 21680626  T
Q  134 ttaaaaaggatgta-taaatttat 156  Q
      | |||||||||| |||||||||    
T  21680625 aaataaaggatgtactaaatttat 21680602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 14015916 - 14015974
Alignment:
Q  47 tttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||| ||||||| | ||||||||| ||||||  |||||||||||||||||||    
T  14015916 tttggcaagtgtaccaaatcctatcgaagtagtaaaaatatcgtttccacgaggactgt 14015974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 32838202 - 32838166
Alignment:
Q  69 atcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||||||||  |||||||||||||||||||    
T  32838202 atcgaagtaataaaaatatcgtttccacgaggactgt 32838166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 38 - 267
Target Start/End: Complemental strand, 31528635 - 31528406
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31528635 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 31528536  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagttttta-gaaaattag 236  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||| |    
T  31528535 aaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-g 31528437  T
Q  237 agagaagtatggttaagaccttcgaatcctc 267  Q
    ||||||||||||||||| |||||||||||||    
T  31528436 agagaagtatggttaagtccttcgaatcctc 31528406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 13710315 - 13710069
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||||||||||||    
T  13710315 tgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaaa-ttcgtttttacgagaactgtatttaacttctacttagcaatttcattattaa 13710217  T
Q  138 aaaggatgtat-aaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattag 236  Q
    ||||||||||| |||||||||||  ||||  ||| ||||||||||| || |||||||||||  |||||||||||||||  ||| | |||||||||||| |    
T  13710216 aaaggatgtataaaatttatattgatgcctgaggaagttgagttgagtt-gtaacataaacggattaaaaacaataaaagatt-ggttttagaaaatttg 13710119  T
Q  237 agagaagtatggttaagaccttcgaatcctccgaaa-ttctcctatgata 285  Q
    ||||||||||||||||||||||| |||| || ||||  ||||||||||||    
T  13710118 agagaagtatggttaagaccttcaaatcatctgaaagctctcctatgata 13710069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 44 - 282
Target Start/End: Complemental strand, 40018218 - 40017981
Alignment:
Q  44 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 143  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |||| || |||||||||| |||| |||||||  |||||||||||||    
T  40018218 atatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgttttcacaaggagtgcatttaacttcgacttggcaatttttttattaaaaagga 40018119  T
Q  144 tgtat-aaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataa-agaattagtttttagaaaattagagaga 241  Q
    ||||| |||||||||||  |||||||||||||||||||||||| |||||||||||  |||||||||||||| ||| |  | ||| |||||| | ||||||    
T  40018118 tgtataaaatttatattgatgccctaggcagttgagttgattt-gtaacataaacggattaaaaacaataagagact--ggtttaagaaaaattgagaga 40018022  T
Q  242 agtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  40018021 agtatggttaagaccttcgaatcctccgaaactctcctatg 40017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 48 - 282
Target Start/End: Complemental strand, 31626784 - 31626551
Alignment:
Q  48 ttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgta 147  Q
    |||| ||||||||||||||| |||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||     
T  31626784 ttggtaagtgaaccaaattcaatcgaagtaataaaaa-ttcgtttcaatgaggactgtatt-aacttctacttagcaatttcattattaaaaaggatgtg 31626687  T
Q  148 taaa-tttatattagtgccctaggcagttgagttgatttagtaacat-aaactaattaaaaacaataaagaattagtttttagaaaattagagagaagta 245  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||| |||  ||||||||| ||||||| ||| | |||||||||||  |||||||| |    
T  31626686 taaaatttatattggtgccctaggcagttgagttgattttgtaacataaaaggaattaaaaataataaaggatt-ggttttagaaaatctgagagaagaa 31626588  T
Q  246 tggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||| | |||||||||||||||  |||||||||    
T  31626587 tggttaagtcattcgaatcctccgaagctctcctatg 31626551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 16295143 - 16294900
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaat-tcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| |||||||||||||||||||  | |||||||||||||| ||  ||   ||||||||||| ||  |||| ||||||| ||||||||| ||||      
T  16295143 tgatagagatttggcaagtgaaccaaaa-ctatcgaagtaataaataagatcaaatccacgaggaccgttgttaatttctactcagcaatttcgttatcg 16295045  T
Q  137 aaaaggatgtataaa-tttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaac-aataaagaattagtttttagaaaatt 234  Q
    ||| ||||||||||| ||||||||  |||||||||||||||||||||||| ||| |||||||  ||||||||| ||||||| ||||||||| ||||||||    
T  16295044 aaa-ggatgtataaaatttatattgatgccctaggcagttgagttgattttgtatcataaaccgattaaaaacaaataaag-attagttttcagaaaatt 16294947  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
     |||||||||||||||||| ||||||||||||||||| ||||||||||    
T  16294946 -gagagaagtatggttaagtccttcgaatcctccgaagttctcctatg 16294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 23673345 - 23673588
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| |||||||||||||||||||  | |||||||||||||| |||||||| ||||||||||| ||  |||| ||||||| | ||||||| |||| |    
T  23673345 tgatagagatttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcaacaatttctttatca 23673443  T
Q  137 aaaaggatgtat-aaatttatattagtgccctaggcagttgagttg--atttagtaacataaactaattaaaaacaataaagaattagtttttagaaaat 233  Q
    |||||||||||| ||||| |   |  |||||||||||||||  |||  |||| |||| ||||||  ||||||||||||||| | || | |||||||||||    
T  23673444 aaaaggatgtattaaattcaaggt--tgccctaggcagttggattggcattt-gtaaaataaacggattaaaaacaataaa-agtttggttttagaaaat 23673539  T
Q  234 tagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  23673540 tagagagatgtatggttaagaccttcgaatcctccgaagttctcctatg 23673588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 36327171 - 36326928
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||||||||||  | |||||||||||||| |||||||| ||||||||||| ||  ||||||||||||  |||||||| |||| |    
T  36327171 tgatagatatttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactctgcaatttctttatca 36327073  T
Q  137 aaaaggatgta-taaatttatattagtgccctaggcagtt-gagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaatt 234  Q
    |||| |||||| |||||| | | |  ||||||||| |||| || | |  || |||| ||||||  ||||||||||||||| | || | ||||||||||||    
T  36327072 aaaaagatgtattaaattcaaagt--tgccctaggaagttagattggtatttgtaaaataaacggattaaaaacaataaa-agtttggttttagaaaatt 36326976  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||| |||||||||||||||| |||||||||||| ||||| ||||    
T  36326975 agagagatgtatggttaagacctttgaatcctccgaagttctcatatg 36326928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 38 - 285
Target Start/End: Original strand, 32575685 - 32575933
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||||||||||||||||||||||   | || ||||||||||| |||||||| ||||||||||| ||  |||||||||||| | | ||||| |||| |    
T  32575685 tgatagatatttggcaagtgaaccaaca-ctattgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcaacgatttcgttataa 32575783  T
Q  137 aaaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatta 235  Q
     ||| ||||||| || ||  |||  | |||||||||||||  ||| |||  |||  ||||| ||| ||||| ||||||| | || ||||| |||| ||||    
T  32575784 taaatgatgtattaaattcaattgttaccctaggcagttggattgtttttataaagtaaacgtaaataaaa-caataaa-agttggttttaagaatatta 32575881  T
Q  236 gaga--gaagtatggttaagaccttcgaatcctccgaaattctcctatgata 285  Q
    ||||  ||||||||||||||||||||||||||||||||  ||||||||||||    
T  32575882 gagaaagaagtatggttaagaccttcgaatcctccgaagctctcctatgata 32575933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 129
Target Start/End: Original strand, 24384925 - 24385018
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa---aaattcgtttccacgaggactgtatttaacttctacttagcaatttc 129  Q
    |||||||||||||||||||| ||||||  | ||||||||||||||   |||||||| | ||||| ||||||  |||| |||||||||||||||||    
T  24384925 tgatagatatttggcaagtgtaccaaa-actatcgaagtaataaaattaaattcgtattcacgatgactgttattaatttctacttagcaatttc 24385018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 33311003 - 33310935
Alignment:
Q  38 tgatagatattt-ggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||||||| |||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  33311003 tgatagatattttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 33310935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 29436113 - 29436003
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||||| ||| |||||| | ||||  | ||||||||||||| ||| ||||| ||||||||||| ||  |||| ||||||||||||| ||| |||  |    
T  29436113 tgatagataattgacaagtgtatcaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 29436014  T
Q  137 aaaaggatgta 147  Q
     ||||||||||    
T  29436013 taaaggatgta 29436003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 40258905 - 40258971
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactg 104  Q
    |||||||| ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||| |||||||    
T  40258905 tgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacaaggactg 40258971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 13017189 - 13017433
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13017189 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactatatttaacttctacttagcaatttcattattaa 13017288  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagttttt-agaaaattag 236  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| |    
T  13017289 aaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttcagaaaatt-g 13017387  T
Q  237 agagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||| |||||||||||||| ||  |||||||||    
T  13017388 agagaagtatggttaagtccttcgaatcctccaaagctctcctatg 13017433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 22221967 - 22221726
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    ||||||| |||||||||||| ||||||  | ||||||||| ||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  22221967 tgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaa 22221868  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattaga 237  Q
    ||||||||||||||||  |||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||    
T  22221867 aaaggatgtataaattattattggtgccctaggcagttgagttgatttagta--ataaactaattaaaaacaataaagaattggtttttagaaaatt-ga 22221771  T
Q  238 gagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||| ||||||||| |||||||||||||||||  |||||||||    
T  22221770 gagaagcatggttaagtccttcgaatcctccgaagctctcctatg 22221726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 22247802 - 22247561
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    ||||||| |||||||||||| ||||||  | ||||||||| ||| ||||||||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  22247802 tgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaa 22247703  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattaga 237  Q
    ||||||||||||||||  |||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||    
T  22247702 aaaggatgtataaattattattggtgccctaggcagttgagttgatttagta--ataaactaattaaaaacaataaagaattggtttttagaaaatt-ga 22247606  T
Q  238 gagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||| ||||||||| |||||||||||||||||  |||||||||    
T  22247605 gagaagcatggttaagtccttcgaatcctccgaagctctcctatg 22247561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 14790864 - 14790620
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||||||| ||| ||| ||||| ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  14790864 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 14790765  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  14790764 aaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatatt 14790668  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  14790667 agagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14790620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 14795894 - 14795648
Alignment:
Q  36 actgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattat 134  Q
    |||||||||||||||||||||| ||||||  | ||||||||| ||| ||| |||||  | |||||||| ||  |||| |||||||  |||||||| ||||    
T  14795894 actgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggaccgttgttaatttctactcggcaatttctttat 14795795  T
Q  135 taaaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaa 232  Q
     |||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |    
T  14795794 caaaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaata 14795698  T
Q  233 ttagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  14795697 ttagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14795648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 282
Target Start/End: Original strand, 30978321 - 30978455
Alignment:
Q  148 taaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagttttt-agaaaattagagagaagtat 246  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||| |||||||||||    
T  30978321 taaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtat 30978419  T
Q  247 ggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||| |||||||||||||| ||  |||||||||    
T  30978420 ggttaagtccttcgaatcctccaaagctctcctatg 30978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 69 - 282
Target Start/End: Complemental strand, 15535270 - 15535058
Alignment:
Q  69 atcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgtat-aaatttatattagtgccc 166  Q
    |||||||||||||| |||||||| ||||||||||| ||  |||||||||||| ||| ||||| |||| ||||||||||||| ||||| |   |  |||||    
T  15535270 atcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcagccatttctttataaaaaaggatgtattaaattcaaggt--tgccc 15535173  T
Q  167 taggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttcgaatcct 266  Q
    ||||||||||||||||||| |||| | |||   ||||||||||||||| | || | ||||| ||||||| || || ||||||||||||||||| ||||||    
T  15535172 taggcagttgagttgattttgtaaaacaaatagattaaaaacaataaa-agtttggttttacaaaattaaagtgatgtatggttaagaccttcaaatcct 15535074  T
Q  267 ccgaaattctcctatg 282  Q
    ||||| || |||||||    
T  15535073 ccgaagttttcctatg 15535058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 46 - 282
Target Start/End: Original strand, 19664674 - 19664909
Alignment:
Q  46 atttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 144  Q
    |||||||||||||||||||  | |||||||||||||| ||||| || ||||||||||| ||  || | ||||||| | ||||||| |||| |||||||||    
T  19664674 atttggcaagtgaaccaaaa-ctatcgaagtaataaataaatttgtatccacgaggaccgttgtttatttctactcaacaatttctttatcaaaaaggat 19664772  T
Q  145 gtat-aaatttatattagtgccctaggcagttgagttgat-ttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagagaa 242  Q
    |||| ||||| |   |  |||||||||||||||  ||| | || |||| ||||||  ||||||||||||||| | || | ||| |||||||||||||||     
T  19664773 gtattaaattcaaggt--tgccctaggcagttggattggtatttgtaaaataaacggattaaaaacaataaa-agtttggtttaagaaaattagagagat 19664869  T
Q  243 gtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  19664870 gtatggttaagaccttcgaatcctccgaagttctcctatg 19664909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 282
Target Start/End: Complemental strand, 16883795 - 16883677
Alignment:
Q  164 ccctaggcagttgagttgattta-gtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttcgaa 262  Q
    |||||||||||||| |||||||  ||||||||||| ||||||||||||||||  ||| ||||| ||||||||||||||||||||||||||||| ||||||    
T  16883795 ccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagacattcgaa 16883697  T
Q  263 tcctccgaaattctcctatg 282  Q
    |||| |||| ||||||||||    
T  16883696 tccttcgaagttctcctatg 16883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 1838720 - 1838475
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| ||||||||||||||||||| |  |||||||||||||| |||||||| ||||| ||||| ||  |||| |||||||  |||||||| |||| |    
T  1838720 tgatagagatttggcaagtgaaccaaaatt-atcgaagtaataaataaattcgtatccacaaggaccgttgttaatttctactcggcaatttctttatca 1838622  T
Q  137 aaaaggatgtataaatttatatt--agtgccctaggcagtt-gagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaa 232  Q
    |||||||||||||||||||||||    |  ||||| ||||| || | | |||  |||  ||||| ||||  |||| |||||| | || ||||| |||| |    
T  1838621 aaaaggatgtataaatttatattgatttttcctagacagttggattggtttttataaagtaaacgtaat--aaaagaataaa-agttggttttaagaata 1838525  T
Q  233 ttagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1838524 ttagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1838475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 20527286 - 20527407
Alignment:
Q  162 tgccctaggcagttgagttgattta-gtaacataaac-taattaaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttc 259  Q
    |||||||||||||||| |||||||  ||||| ||||| ||| ||||||||||||| | || ||||| |||| ||||||||||||||||||||||||||||    
T  20527286 tgccctaggcagttgaattgatttttgtaacgtaaacataaataaaaacaataaa-agttggttttaagaatattagagagaagtatggttaagaccttc 20527384  T
Q  260 gaatcctccgaaattctcctatg 282  Q
    |||||||||||| ||||||||||    
T  20527385 gaatcctccgaagttctcctatg 20527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 108 - 280
Target Start/End: Complemental strand, 15540744 - 15540574
Alignment:
Q  108 ttaacttctacttagcaatttcattattaaaaaggatgtat-aaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaa 206  Q
    |||||||||||| |||||||||  ||| ||||||||||||| ||||| |   |  | ||||||||||||||||||||||  ||| |||||   |||||||    
T  15540744 ttaacttctactcagcaatttctatatcaaaaaggatgtattaaattcaaggt--ttccctaggcagttgagttgattttctaaaataaagggattaaaa 15540647  T
Q  207 acaataaagaattagtttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctccta 280  Q
    ||||||||   |||||||| ||||||||| |||||  |||||||||||||||||||||||||||| ||||||||    
T  15540646 acaataaaagtttagtttt-agaaaattaaagagatttatggttaagaccttcgaatcctccgaagttctccta 15540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 27649165 - 27649104
Alignment:
Q  221 gtttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  27649165 gttttaagaaaattagagcgaagtatggttaagaccttcgaatcctccgaagttctcctatg 27649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 32427544 - 32427303
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||| ||||||||||||  | |||||||||||||| ||||| || || |||||||| ||  |||| ||||||| ||||||||| |||| |    
T  32427544 tgatagatatttggtaagtgaaccaaaa-ctatcgaagtaataaataaatttgtatctacgaggaccgttgttaa-ttctactcagcaatttctttatca 32427447  T
Q  137 aaaaggatgtat-aaatttatattagtgccctaggcagttgagttgat-ttagtaacataaactaattaaaaacaataaagaattagtttttagaaaatt 234  Q
    |||| ||||||| ||||| |   |  |||||||| ||||||  ||| | || |||| |||||| ||||||||||||| || | || | ||||||||||||    
T  32427446 aaaaagatgtattaaattcaaggt--tgccctag-cagttggattggtatttgtaaaataaacgaattaaaaacaatgaa-agtttggttttagaaaatt 32427351  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||| || || |||||||||| |||||||| ||| ||||||||||    
T  32427350 agagagatgtttgattaagacctttgaatcctctgaagttctcctatg 32427303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 204 - 282
Target Start/End: Original strand, 32704421 - 32704498
Alignment:
Q  204 aaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||| | || ||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  32704421 aaaacaataaa-agttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 32704498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 164 - 239
Target Start/End: Original strand, 11183962 - 11184037
Alignment:
Q  164 ccctaggcagttgagttga-tttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagaga 239  Q
    ||||||||||||||||||| ||| |||||||||||  | ||||||||||||| | || |||||||||||||||||||    
T  11183962 ccctaggcagttgagttgatttttgtaacataaacgtaataaaaacaataaa-agttggtttttagaaaattagaga 11184037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 12980682 - 12980737
Alignment:
Q  228 gaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatga 283  Q
    |||||||| ||||||  ||||| ||||||||||||||||||||| |||||||||||    
T  12980682 gaaaattaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatga 12980737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 12983571 - 12983624
Alignment:
Q  230 aaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatga 283  Q
    |||||| ||||||  ||||| ||||||||||||||||||||| |||||||||||    
T  12983571 aaattaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatga 12983624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 19476362 - 19476295
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactg 104  Q
    ||||||||| ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||| |||||||    
T  19476362 ctgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacaaggactg 19476295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 2379586 - 2379522
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggac 102  Q
    |||||||  ||||||||||| ||||||| | ||||||||| ||||||  ||||| ||||||||||    
T  2379586 tgatagaattttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggac 2379522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 7559850 - 7559920
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa---aaattcgtttccacgaggactgt 105  Q
    ||||| ||||||| |||||| || ||||| |||||||||||||||   || ||||||||||||| ||||||    
T  7559850 tgataaatatttgacaagtgtactaaatttgatcgaagtaataaagataagttcgtttccacgaagactgt 7559920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Original strand, 7769588 - 7769620
Alignment:
Q  238 gagaagtatggttaagaccttcgaatcctccga 270  Q
    ||||| |||||||||||||||||||||||||||    
T  7769588 gagaaatatggttaagaccttcgaatcctccga 7769620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 22626312 - 22626554
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22626312 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 22626411  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattaga 237  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |  ||||||||||| ||    
T  22626412 aaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaatt-ggatttagaaaatt-ga 22626509  T
Q  238 gagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||    
T  22626510 gagaagtatggttaagtccttcgaatcctccaaagctctcctatg 22626554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 11138570 - 11138812
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11138570 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 11138669  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattaga 237  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |  || |||||||| ||    
T  11138670 aaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaatatagaatt-ggattcagaaaatt-ga 11138767  T
Q  238 gagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||    
T  11138768 gagaagtatggttaagtccttcgaatcctccaaagctctcctatg 11138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 38 - 285
Target Start/End: Original strand, 39563510 - 39563757
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  39563510 tgatagatatttggcaagtgaaccaaattcaatcaaagtaataaaaaattcgtttccacgaggactgta-ttaacttctacttagcaatttcattataaa 39563608  T
Q  138 aaaggatgtat-aaatttatattagtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatta 235  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| | ||||  ||| | |||||||||||      
T  39563609 aaaggatgtgtaaaatttatattagtgccctaggcagttgagttgattttgtaacataaacaaaattaaaaatagtaaaagatt-ggttttagaaaatct 39563707  T
Q  236 gagagaagtatggttaagaccttcgaatcctccgaaattctcctatgata 285  Q
    |||||||| ||||||||| ||||||||||||||||   ||||||||||||    
T  39563708 gagagaagaatggttaagtccttcgaatcctccgacgctctcctatgata 39563757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 20536333 - 20536445
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaat---tcgtttccacgaggactgtatttaacttctacttagcaatttcattat 134  Q
    |||||||||||||| ||||| ||||||  | || |||||| |||| ||    |||| ||||||||||||||||||||||||||||||| |||||||||||    
T  20536333 tgatagatatttggaaagtgtaccaaaaactattgaagtagtaaataaaagatcgtatccacgaggactgtatttaacttctacttagaaatttcattat 20536432  T
Q  135 taaaaaggatgta 147  Q
    |||||||||||||    
T  20536433 taaaaaggatgta 20536445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 13979730 - 13979488
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| |||||||||||||||||||  | |||||||||||||| ||| |||  |||||||||||||   |||| ||||||| ||||||||| ||||      
T  13979730 tgatagagatttggcaagtgaaccaaaa-ctatcgaagtaataaataaaatcgaatccacgaggactgctgttaatttctactcagcaatttctttatcg 13979632  T
Q  137 aaaaggatgtataaatttatattagtgccctaggcagttgagttgattt-agtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||| |||||||| || | || |   ||||| |||||||||  ||| ||| | |||  ||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  13979631 aaa-ggatgtattaaat-atctggttgcccaaggcagttggattggttttaataaagtaaacgtaaataaaa-caataaa-agttggttttaagaatatt 13979536  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||||    
T  13979535 agagagaagtatggttaagacctttgaatcctccgaagctctcctatg 13979488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 46731555 - 46731496
Alignment:
Q  223 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||| ||||    
T  46731555 ttttagaaaattagagagatgtaaggttaagaccttcgaatcctccgaagttctcatatg 46731496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 38 - 148
Target Start/End: Complemental strand, 46731699 - 46731589
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| ||||||||||||||| |||  | ||||||||||| || ||||| || ||||||||||| ||  |||||||||||| ||||||||| |||| |    
T  46731699 tgatagagatttggcaagtgaacaaaaa-ctatcgaagtaatgaataaatttgtatccacgaggaccgttgttaacttctactcagcaatttctttatca 46731601  T
Q  137 aaaaggatgtat 148  Q
    ||||||||||||    
T  46731600 aaaaggatgtat 46731589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 19869343 - 19869223
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| || ||| || ||| ||||| ||| ||| ||||| ||||||||||| ||  |||| ||||||||||||| ||| |||  |    
T  19869343 tgatagatatttggcaagtgtactaaaatctatcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 19869244  T
Q  137 aaaaggatgta-taaatttat 156  Q
     |||||||||| |||||||||    
T  19869243 taaaggatgtagtaaatttat 19869223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 35366562 - 35366510
Alignment:
Q  95 acgaggactgtatttaacttctacttagcaatttcattattaaaaaggatgtat 148  Q
    |||||||| ||  |||||||||||||||||||||||||| ||||||||||||||    
T  35366562 acgaggaccgttgttaacttctacttagcaatttcatta-taaaaaggatgtat 35366510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 50096904 - 50096825
Alignment:
Q  160 agtgccctaggcagttgagttga-tttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagaga 239  Q
    ||||||||| ||||||||||||| ||| |||||||||||  | |||||||| |||| | || |||||||||||||||||||    
T  50096904 agtgccctaagcagttgagttgatttttgtaacataaacgtaataaaaacagtaaa-agttggtttttagaaaattagaga 50096825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 50461303 - 50461371
Alignment:
Q  38 tgatagatattt-ggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||||||| |||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  50461303 tgatagatattttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 50461371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 3306213 - 3306144
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa--aaattcgtttccacgaggactgt 105  Q
    |||||||||||||||||||| |||||   | ||||||||||||||  || ||||| ||||||||||||||    
T  3306213 tgatagatatttggcaagtgtaccaataactatcgaagtaataaattaagttcgtatccacgaggactgt 3306144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 48063791 - 48063857
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactg 104  Q
    |||||||| ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||| |||||||    
T  48063791 tgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacaaggactg 48063857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 25442611 - 25442659
Alignment:
Q  36 actgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaa 84  Q
    |||||||||| ||||||||||| ||||||| | ||||||||| ||||||    
T  25442611 actgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaa 25442659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 28331132 - 28331064
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||||| |||||||||| |||||   | ||||||||| ||||||  ||||| |||||||||||||    
T  28331132 ctgatagataattggcaagtgtaccaataactatcgaagtagtaaaaatatcgttcccacgaggactgt 28331064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 10109 - 9865
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaa-aattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  10109 tgatagaaatttggcaagtgaatcaaattcgatcgaagtaataaaagaattcgtttcctcagggactgtatttaacttctacttagcaatttcattatta 10010  T
Q  137 aaaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattag 236  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |    
T  10009 aaaaggatgtataaatttatattggtcccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaataattggtttttagaaaatt-g 9911  T
Q  237 agagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||| |||||||||||||||||  |||||||||    
T  9910 agagaagtatggttaagtccttcgaatcctccgaagctctcctatg 9865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 23759609 - 23759852
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||    
T  23759609 tgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaaagttcgtttctacgaggactgtatttaacttctacttagcaaattcatt-ttaa 23759707  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattaga 237  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||  ||| | ||    
T  23759708 aaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatcga 23759807  T
Q  238 gagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||    
T  23759808 gagaagtatggttaagtccttcgaatcctccaaagctctcctatg 23759852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 44 - 279
Target Start/End: Complemental strand, 11279730 - 11279496
Alignment:
Q  44 atatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaagga 143  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||    
T  11279730 atatttggcaagtgaaccaaattcaatcgaagtaataaaaattt-gtttccacaaggactatatttaatttctacttagcaatttcattattaaaaagga 11279632  T
Q  144 tgtat-aaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaac-aataaagaattagtttttagaaaattagagaga 241  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||| ||| |||||||||| ||| ||||||    
T  11279631 tgtataaaatttatattggtgccctaggcagttgagttgattttgtaacataaactgattaaaaacgaataaag-attggtttttagaagatt-gagaga 11279534  T
Q  242 agtatggttaagaccttcgaatcctccgaaattctcct 279  Q
    |||||||||||| |||||||||| | |||| |||||||    
T  11279533 agtatggttaagtccttcgaatctttcgaagttctcct 11279496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 36222309 - 36222552
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||| |||||||||||| |||||||||||| || |||||||||||| ||||||| ||||||||| ||||||||| |||||| ||||||||||||||||||    
T  36222309 tgatggatatttggcaaatgaaccaaattcaattgaagtaataaaa-attcgttaccacgaggattgtatttaatttctacgtagcaatttcattattaa 36222407  T
Q  138 aaaggatgtat-aaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattag 236  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||  ||||||||||| |||||||||||  ||  ||| |||||||||| ||| |    
T  36222408 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttctaacataaactgattaaaaacaaagaaagattggtttttagaagatt-g 36222506  T
Q  237 agagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  36222507 agagaagtatggttaagtccttcgaatcctccgaagttctcctatg 36222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 36 - 282
Target Start/End: Complemental strand, 295108 - 294866
Alignment:
Q  36 actgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 135  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  295108 actgatggatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgtgtccacgaggactgtatttaacttctacttagcaatttcattatt 295009  T
Q  136 aaaaaggatgt-ataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||| |||||||||||||  ||||| |||||||  ||||| ||| ||||||||| ||  |||||| |||  ||| ||| | ||||||||||||    
T  295008 aaaaaggatgtaataaatttatattgatgcccgaggcagt--agttg-ttttgtaacataagctggttaaaagcaaataaggatt-ggttttagaaaatt 294913  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
     |||||||||||||||||| | ||||||||||||||| ||||||||||    
T  294912 -gagagaagtatggttaagtctttcgaatcctccgaagttctcctatg 294866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 33313239 - 33312996
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||||||||  ||||||| ||||||| |||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||    
T  33313239 tgatagatatttgagaagtgaaacaaattcaatcgaagtaataaaaa-ttcgtttctacgaggactgtatt-aacttctacttagcaatttcattattaa 33313142  T
Q  138 aaaggatgtataaa-tttatattagtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatta 235  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||  ||||||||| ||||||| ||| | |||||||||||      
T  33313141 aaaggatgtgtaaaatttatattggtgccctaggcagttgagttgattttgtaacataaacggaattaaaaataataaaggatt-ggttttagaaaatct 33313043  T
Q  236 gagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||  ||||||||| ||||||||||||| |||  |||||||||    
T  33313042 gagagaaaaatggttaagtccttcgaatcctctgaagctctcctatg 33312996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 282
Target Start/End: Original strand, 46846320 - 46846556
Alignment:
Q  46 atttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaaggatg 145  Q
    |||||||||||||| || |||| ||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  46846320 atttggcaagtgaatcagattcaatcgaagtaataaaaatat-gtttccacgaggactgtatttaatttctacttagcaatttcattattaaaaaggatg 46846418  T
Q  146 tat-aaatttatattagtgccctaggcagttgagttgatttagtaacataaact-aattaaaaacaataaagaattagtttttagaaaattagagagaag 243  Q
    ||| ||||||||||| |||||||||||||||||||||| ||  ||  ||||||| | | ||||||||||||  ||| |||||||||||||| ||||||||    
T  46846419 tataaaatttatattggtgccctaggcagttgagttgaattcttattataaactgactaaaaaacaataaaagattggtttttagaaaatt-gagagaag 46846517  T
Q  244 tatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||| ||||||||||||||||| |||| |||||    
T  46846518 tatggttaagtccttcgaatcctccgaagttcttctatg 46846556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 3861907 - 3862150
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||||||||||||||| || | | || |||||||||||||| |||| || |||||||||| |||  |||||||||||||||||||||||||||| |    
T  3861907 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacgaggattgttattaacttctacttagcaatttcattatt-a 3862005  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttga--tttagtaacataaactaattaaaaacaataaagaattagtttttagaaaatta 235  Q
    ||||||||||| || ||  || | |||||||||||||| | ||||  ||| |||||||||||| |||||||||||||||  ||| | ||||| |||||||    
T  3862006 aaaggatgtattaaattcaatga-tgccctaggcagttcaattgattttttgtaacataaactgattaaaaacaataaaagatt-ggttttataaaatta 3862103  T
Q  236 gagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||| |||||||||||||||||| |||| ||||||||||    
T  3862104 gagagaagtatgattaagaccttcgaatccttcgaagttctcctatg 3862150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 6967393 - 6967149
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||||||| ||| ||| ||||| ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  6967393 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 6967294  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  6967293 aaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatatt 6967197  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  6967196 agagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 6967149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 17866353 - 17866597
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||||||| ||| ||| ||||| ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  17866353 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 17866452  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | ||||||||||||||||| || ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  17866453 aaaaggatgtataaatttatattgattgccctaggcagttgagctgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatatt 17866549  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||| |||||||||||||||| ||| ||||||||||    
T  17866550 agagagaagtatggtttagaccttcgaatcctctgaagttctcctatg 17866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 24783654 - 24783410
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcatt-att 135  Q
    ||||||| ||||| |||||||||||||  | |||||||||||||| ||||| || ||||||||||| ||  |||| |||||||  |||||||| || ||     
T  24783654 tgatagagatttgacaagtgaaccaaaa-ctatcgaagtaataaataaatttgtatccacgaggaccgttgttaatttctactcggcaatttcttttatc 24783556  T
Q  136 aaaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaatt 234  Q
    |||||||||||||||||||||||| | || || |||||||||||||| ||| |||||||||||| |   ||||||||||| | || ||||| |||| |||    
T  24783555 aaaaaggatgtataaatttatattgattgtccaaggcagttgagttgtttt-gtaacataaacttaaataaaacaataaa-agttggttttaagaatatt 24783458  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||    
T  24783457 agagagaagtatggttaagacctttgaatcctccgaagttctcatatg 24783410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 23313383 - 23313504
Alignment:
Q  161 gtgccctaggcagttgagttgattta-gtaacataaactaattaaaaacaataaa-gaattagtttttagaaaattagagagaagtatggttaagacctt 258  Q
    |||||||||| |||||| |||||||  ||||||||||| |||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||    
T  23313383 gtgccctaggtagttgaattgatttttgtaacataaacgaattaaaaacaataaaagaat--ggttttagaaaattagagagaagtatggttaagacctt 23313480  T
Q  259 cgaatcctccgaaattctcctatg 282  Q
     |||||||||||| ||||||||||    
T  23313481 tgaatcctccgaagttctcctatg 23313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 282
Target Start/End: Original strand, 17863202 - 17863338
Alignment:
Q  145 gtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaattagagagaa 242  Q
    ||||||||||||||| | ||||||||||||||||| || ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||||||||||    
T  17863202 gtataaatttatattgattgccctaggcagttgagctgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatattagagagaa 17863298  T
Q  243 gtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  17863299 gtatggttaagaccttcgaatcctctgaagttctcctatg 17863338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 165 - 282
Target Start/End: Complemental strand, 23108106 - 23107989
Alignment:
Q  165 cctaggcagttgagttgat-ttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttcgaat 263  Q
    ||||| ||||||||||||| || ||||||||||| ||||||||||||||||  ||| ||||| |||||||||||||||| | ||||||||||||||||||    
T  23108106 cctagacagttgagttgatgtttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaaatgtggttaagaccttcgaat 23108008  T
Q  264 cctccgaaattctcctatg 282  Q
    | ||||||  |||||||||    
T  23108007 catccgaagctctcctatg 23107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 36843131 - 36843181
Alignment:
Q  232 attagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  36843131 attagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 36843181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 282
Target Start/End: Complemental strand, 9765864 - 9765803
Alignment:
Q  221 gtttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  9765864 gttttaagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 9765803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 153
Target Start/End: Original strand, 17857880 - 17857996
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | |||||| || ||| ||| ||||| ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  17857880 tgatagatatttggcaagtgtaccaaaagctatcgaaatagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 17857979  T
Q  137 aaaaggatgtataaatt 153  Q
    |||||||||||||||||    
T  17857980 aaaaggatgtataaatt 17857996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 6603800 - 6603732
Alignment:
Q  38 tgatagatattt-ggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||||||| |||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  6603800 tgatagatattttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 6603732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 8277339 - 8277271
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||  ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  8277339 ctgatagaattttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttaccacgaggactgt 8277271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 3540924 - 3541042
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||| |||||||||||||| ||||||  | ||| ||||| ||| ||| ||||| ||||||||||| ||  | |||||||||||||||| ||| |||  |    
T  3540924 tgataaatatttggcaagtgtaccaaaa-ctatcaaagtagtaataaagttcgtatccacgaggaccgttgtgaacttctacttagcaagttcgttaaaa 3541022  T
Q  137 aaaaggatgtataaatttat 156  Q
     ||||||||||| |||||||    
T  3541023 taaaggatgtattaatttat 3541042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 16166090 - 16166023
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||| ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||| ||||||||    
T  16166090 tgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacaaggactgt 16166023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 104
Target Start/End: Original strand, 37165917 - 37165983
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactg 104  Q
    |||||||| ||||||||||| ||||||| | ||||||||| ||||||  |||||||||  |||||||    
T  37165917 tgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgtttccataaggactg 37165983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 38431757 - 38431669
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataa-aaaattcgtttccacgaggactgtatttaacttctacttagcaa 125  Q
    |||||||||||||| ||||| ||||||  | ||||||||| ||| ||| ||||| |||| |||||| ||  |||| |||||||||||||    
T  38431757 tgatagatatttggaaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccatgaggaccgttgttaatttctacttagcaa 38431669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 12172218 - 12172025
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaat-tcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12172218 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 12172119  T
Q  137 aaaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaa 230  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |||||    
T  12172118 aaaaggatgtataaatttatattggtgccctaggcagttgagttgatttagtaacataaactgattaaaaacaataaagatttggtttctagaa 12172025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 2542129 - 2541886
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||||||||||||||||| |||||| || |||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  2542129 ctgatagatatttggcaagtgtaccaaagtcaatcgaagtaataaataattcgtatccacgaggactgtatttaacttctactgagcaatttcattatta 2542030  T
Q  137 aaaaggatgtataaatttatattagtgccctaggcagttgagttgatt-tagtaacataaactaattaaaaacaataaagaattagtttttagaaaatta 235  Q
    |||||||||||| || ||  | | |||||||||||||||||||| ||| | |||||||||||  |||||||||||||||  ||  |||||| ||||||||    
T  2542029 aaaaggatgtattaaatt-caatggtgccctaggcagttgagtttattcttgtaacataaacggattaaaaacaataaaatataggttttttgaaaatta 2541931  T
Q  236 gagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
     ||||  ||||||||||||||||||||||||| ||| ||||| ||||    
T  2541930 aagag--gtatggttaagaccttcgaatcctctgaagttctcttatg 2541886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 647203 - 647447
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||| |||||||||||||| ||||||  | ||||||||| ||| ||| || || ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  647203 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 647302  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||| ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  647303 aaaaggatgtataaatttatattgattgccctaggcatttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatatt 647399  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||| |||||||||||| ||| ||||||||||    
T  647400 agagagaagtatggttaagatcttcgaatcctctgaagttctcctatg 647447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 38 - 282
Target Start/End: Original strand, 650475 - 650719
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||| |||||||||||||| ||||||  | ||||||||| ||| ||| || || ||||||||||| ||  |||| |||||||  ||||||||  ||| |    
T  650475 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctatatca 650574  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | ||||||||||| |||||||| ||| ||||||||||| ||| ||||| ||||||| | || ||||| | || |||    
T  650575 aaaaggatgtataaatttatattgattgccctaggcatttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcataatatt 650671  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  650672 agagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 650719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 282
Target Start/End: Original strand, 26062698 - 26062937
Alignment:
Q  46 atttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggact--gtatttaacttctacttagcaatttcattattaaaaagg 142  Q
    |||||||||||||||||||  | |||||| ||||||| |||||||| |||||||||||   ||  |||||||||||| | ||||||| |||| |||||||    
T  26062698 atttggcaagtgaaccaaaa-ctatcgaaataataaataaattcgtatccacgaggaccccgttgttaacttctactcaacaatttctttatcaaaaagg 26062796  T
Q  143 atgtat-aaatttatattagtgccctaggcagttgagttgat-ttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagag 240  Q
    |||||| ||||| |   |  ||||||||| |||||  ||| | || |||| ||||||  ||||||||||||||| | || | ||||||||||||||||||    
T  26062797 atgtattaaattcaaggt--tgccctaggtagttggattggtatttgtaaaataaacggattaaaaacaataaa-agtttggttttagaaaattagagag 26062893  T
Q  241 aa--gtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |   |||||||||||||||| |||||||||||| ||||||||||    
T  26062894 agatgtatggttaagacctttgaatcctccgaagttctcctatg 26062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 11649426 - 11649477
Alignment:
Q  231 aattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  11649426 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 11649477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 26060635 - 26060589
Alignment:
Q  236 gagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  26060635 gagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 26060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 24151028 - 24150961
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||| ||||||||||| ||||||| | ||||||||| ||||||  | ||| |||||||||||||    
T  24151028 tgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatattgttcccacgaggactgt 24150961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 38283247 - 38283314
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||| ||||||||||| ||||||| | ||||||||| ||||||  | ||| |||||||||||||    
T  38283247 tgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatattgttcccacgaggactgt 38283314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 11649328 - 11649382
Alignment:
Q  161 gtgccctaggcagttgagttga-tttagtaacataaactaattaaaaacaataaa 214  Q
    |||||||||||||||||||||| ||| |||| |||||| || |||||||||||||    
T  11649328 gtgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaataaa 11649382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 19929243 - 19929126
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaat-tcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 135  Q
    ||||||||||||||||||||| |||||   | ||||||||| ||| |||| ||| |||||||||||| ||  |||| ||||||||||||| ||| ||       
T  19929243 ctgatagatatttggcaagtgtaccaataactatcgaagtagtaataaatatcg-ttccacgaggaccgttgttaatttctacttagcaagttctttgac 19929145  T
Q  136 aaaaaggatgtataaattt 154  Q
    | ||||||||| |||||||    
T  19929144 ataaaggatgtgtaaattt 19929126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 29325168 - 29325110
Alignment:
Q  47 tttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  29325168 tttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 29325110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 40616583 - 40616641
Alignment:
Q  47 tttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  40616583 tttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 40616641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 18911861 - 18911793
Alignment:
Q  38 tgatagatatttg-gcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||||  ||||||| || |||| | ||||||||| ||||||  |||||||||||||||||||    
T  18911861 tgatagatattttagcaagtgtactaaatactatcgaagtagtaaaaatatcgtttccacgaggactgt 18911793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 156
Target Start/End: Original strand, 33400075 - 33400195
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataa-aaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||| ||| ||| ||| ||||| |||||||| || ||  |||| |||| |||||||| ||| |||  |    
T  33400075 tgatagatatttggcaagtgtaccaaaagctatcgaggtagtaataaagttcgtatccacgagaaccgttgttaatttctgcttagcaagttcgttaaaa 33400174  T
Q  137 aaaaggatgt-ataaatttat 156  Q
     ||||||||| ||||||||||    
T  33400175 taaaggatgtaataaatttat 33400195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 151; Significance: 7e-80; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 37 - 282
Target Start/End: Original strand, 24184 - 24426
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||| |||||||||||| ||||||  | ||||||||| ||| ||||| ||||||||||||||||||||||||||||||| | ||||||||||||||    
T  24184 ctgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaatttgtttccacgaggactgtatttaacttctactcaacaatttcattatta 24283  T
Q  137 aaaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattag 236  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||| |||||||||||||| |    
T  24284 aaaaggatgtataaattattattggtgccctaggcagttgagttgatttagta--ataaactgattaaaaacaataaagaattggtttttagaaaatt-g 24380  T
Q  237 agagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||| ||||||||| |||||||||||||||||  |||||||||    
T  24381 agagaagcatggttaagtccttcgaatcctccgaagctctcctatg 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 9e-61; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 12575300 - 12575532
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    ||||| |||||||||||||| ||||||||| |||||||||||||| ||||||| ||||||||||||||  |||||||||||| | ||| |||||||||||    
T  12575300 tgataaatatttggcaagtgtaccaaattcaatcgaagtaataaataattcgtatccacgaggactgttgttaacttctactcaacaagttcattattaa 12575399  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttga-tttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattag 236  Q
    ||||||||||| || ||  | | |||||||||||||||||||||| ||| |||||||||| | |||||||||||||||  ||| | ||||||||||||||    
T  12575400 aaaggatgtattaaatt-caatggtgccctaggcagttgagttgatttttgtaacataaattgattaaaaacaataaaagatt-ggttttagaaaattag 12575497  T
Q  237 agagaagtatggttaagaccttcgaatcctccgaa 271  Q
    |||||||||||||||||||| | ||||||||||||    
T  12575498 agagaagtatggttaagaccattgaatcctccgaa 12575532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 38 - 285
Target Start/End: Complemental strand, 14418707 - 14418464
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||| ||||||||||||||||||  | ||||||||| |||| |||||||| |||||||||| ||  |||||| | ||||||||||||| |||| ||    
T  14418707 tgatagatttttggcaagtgaaccaaag-ctatcgaagtagtaaataattcgtt-ccacgaggaccgttgttaactacaacttagcaatttctttatcaa 14418610  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattaga 237  Q
    ||||||| | | || ||  ||   |||||||||||||||||||| |||  |||||||||| |||||||||||||||| | || ||||| |||| ||||||    
T  14418609 aaaggatatgttaaattcaatggttgccctaggcagttgagttggtttt-taacataaacaaattaaaaacaataaa-agttggttttaagaatattaga 14418512  T
Q  238 gagaagtatggttaagaccttcgaatcctccgaaattctcctatgata 285  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  14418511 gagaagtatggttaagacattcgaatcctccgaatttctcctatgata 14418464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 13097100 - 13097022
Alignment:
Q  203 aaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  13097100 aaaaacaataaaagattagtttt-agaaaattagagagaagtatggttaagaccttcgaatcctccgaagttatcctatg 13097022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 41778865 - 41778985
Alignment:
Q  161 gtgccctaggcagttgagttgattta-gtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttc 259  Q
    ||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||  |||    ||||||| |||| |||||||||||||||||||||||    
T  41778865 gtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagatt--gatttagaagattaaagagaagtatggttaagaccttc 41778962  T
Q  260 gaatcctccgaaattctcctatg 282  Q
     |||| |||||| ||||||||||    
T  41778963 aaatcttccgaagttctcctatg 41778985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 41836415 - 41836466
Alignment:
Q  231 aattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||| |||||||| ||||||||||||||||||||||||||| ||||||||||    
T  41836415 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 41836466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 9467429 - 9467309
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataa-aaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||||||| ||| ||| ||||| ||||||||||| ||  |||| |||| |||||||| ||| |||  |    
T  9467429 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttcttcttagcaagttcgttaaaa 9467330  T
Q  137 aaaaggatgta-taaatttat 156  Q
     |||||||||| |||||||||    
T  9467329 taaaggatgtagtaaatttat 9467309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 44008356 - 44008308
Alignment:
Q  223 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaa 271  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  44008356 ttttagaaaattagaaagaattatggttatgaccttcgaatcctccgaa 44008308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 14418435 - 14418396
Alignment:
Q  232 attagagagaagtatggttaagaccttcgaatcctccgaa 271  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  14418435 attagagagaagtatggttaagacattcgaatcctccgaa 14418396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 10498016 - 10498081
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggact 103  Q
    |||||||| ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||    
T  10498016 tgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggact 10498081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 16954129 - 16954060
Alignment:
Q  37 ctgatagatattt-ggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||||| |||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  16954129 ctgatagatattttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 16954060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 104
Target Start/End: Complemental strand, 31285030 - 31284962
Alignment:
Q  36 actgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactg 104  Q
    |||||||||| ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||| |||||||    
T  31285030 actgatagatttttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacaaggactg 31284962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 18825665 - 18825723
Alignment:
Q  47 tttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  18825665 tttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 18825723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 214
Target Start/End: Original strand, 41836317 - 41836371
Alignment:
Q  161 gtgccctaggcagttgagttga-tttagtaacataaactaattaaaaacaataaa 214  Q
    |||||||||||||||||||||| ||| |||| |||||| || |||||||||||||    
T  41836317 gtgccctaggcagttgagttgacttttgtaatataaacgaaataaaaacaataaa 41836371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 453952 - 453863
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaa 125  Q
    |||||||||||||| |||||| ||||||  | || |||||| ||| ||| ||||| ||||||||||| ||  |||| |||||||||||||    
T  453952 ctgatagatatttgacaagtgtaccaaaaactatggaagtactaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 453863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 44026858 - 44026922
Alignment:
Q  40 atagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactg 104  Q
    |||||| ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||| |||||||    
T  44026858 atagatgtttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacaaggactg 44026922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 10765165 - 10764921
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||||||| ||| ||| ||||| ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  10765165 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 10765066  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  10765065 aaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatatt 10764969  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  10764968 agagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 10764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 13493508 - 13493264
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    |||||||||||||||||||| ||||||  | ||||||||| ||| ||| ||||| ||||||||||| ||  |||| |||||||  |||||||| |||| |    
T  13493508 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 13493409  T
Q  137 aaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaatt 234  Q
    ||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||| ||| ||||| ||||||| | || ||||| |||| |||    
T  13493408 aaaaggatgtataaatttatattgattgccctaggcagttgagttgtttt-gtaacataaacgtaaataaaa-caataaa-agttggttttcagaatatt 13493312  T
Q  235 agagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  13493311 agagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 13493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 39 - 282
Target Start/End: Complemental strand, 1936873 - 1936628
Alignment:
Q  39 gatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaa 138  Q
    ||||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| | |||  |  ||||||||||||| |||||||||||| |||     
T  1936873 gatagatatttggcaagtgaaccaaattcaatcgaagtaatgaataattcatttccacaatgaccattgttaacttctacttggcaatttcattagtaat 1936774  T
Q  139 aaggatgtataaatttatattagt-gccctaggcagttgagttgatt-tagtaacataaact-aattaaaaacaataaagaattagtttttagaaaatta 235  Q
    || ||||||| || ||  ||  || | |||||||||||||||||||| | ||| |||||||| ||||||||||  |||| | || | |||||||||||||    
T  1936773 aacgatgtattaaattcaatgggttgacctaggcagttgagttgattgttgtatcataaactgaattaaaaacggtaaa-attttggttttagaaaatta 1936675  T
Q  236 gagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||    
T  1936674 gagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1936628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 37 - 282
Target Start/End: Complemental strand, 13496233 - 13495989
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaa-aaattcgtttccacgaggactgtatttaacttctacttagcaatttcattatt 135  Q
    |||||||| ||||| |||||||||||||  | |||||||||||||| |||||||| ||||||||||| ||  |||| |||||||  |||||||| ||||     
T  13496233 ctgatagagatttgacaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatc 13496135  T
Q  136 aaaaaggatgtataaatttatatt-agtgccctaggcagttgagttgatttagtaacataaac-taattaaaaacaataaagaattagtttttagaaaat 233  Q
    |||||||||||||||||||||||| | || ||||||||||||| ||| ||| ||||||||||| ||| ||||| ||||||| | ||  |||| |||| ||    
T  13496134 aaaaaggatgtataaatttatattgattgtcctaggcagttgaattgtttt-gtaacataaacgtaaataaaa-caataaa-agttgattttaagaatat 13496038  T
Q  234 tagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  13496037 tagagagaagtatggttaagacctttgaatcctccgaagttctcctatg 13495989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 34066467 - 34066343
Alignment:
Q  161 gtgccctaggcagttgagttgattta-gtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttc 259  Q
    ||||||||||||||||| |||||||  ||||||||||| ||||||||||||||||  ||| ||||| |||||||||||||||||||||||||||||||||    
T  34066467 gtgccctaggcagttgaattgatttttgtaacataaacgaattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagaccttc 34066369  T
Q  260 gaatcctccgaaattctcctatgata 285  Q
    |||||||||||| |||||||||||||    
T  34066368 gaatcctccgaagttctcctatgata 34066343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 37 - 282
Target Start/End: Original strand, 32505856 - 32506098
Alignment:
Q  37 ctgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaat-tcgtttccacgaggac---tgtat-ttaacttctacttagcaatttcat 131  Q
    ||||||||||||||||||||||||||||  | |||||||||||||| ||  |||| |||||||||||   || || ||||||||||||   ||||||| |    
T  32505856 ctgatagatatttggcaagtgaaccaaaa-ctatcgaagtaataaataagatcgtatccacgaggaccattgcatgttaacttctactcgacaatttctt 32505954  T
Q  132 tattaaaaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaa 231  Q
    ||| ||||||||||||||||||||||||  |||   |||||||||      |||  |||||||||| |||||||||||||||| | || ||||| ||||     
T  32505955 tatcaaaaaggatgtataaatttatattgatgcgtgaggcagttg------ttttctaacataaacgaattaaaaacaataaa-agttggttttaagaat 32506047  T
Q  232 attagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  32506048 attatagagaagtgtggttaagaccttcgaatcctccgaagttctcctatg 32506098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 161 - 285
Target Start/End: Original strand, 16190301 - 16190424
Alignment:
Q  161 gtgccctaggcagttgagttgat-ttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagagagaagtatggttaagaccttc 259  Q
    |||||||||| | |||||||||| || ||||||||||| |||||||||||||||||| |  | ||||||||||||| |||||||||||||||||||||||    
T  16190301 gtgccctaggaaattgagttgatgtttgtaacataaacgaattaaaaacaataaagatt--ggttttagaaaattaaagagaagtatggttaagaccttc 16190398  T
Q  260 gaatcctccgaaattctcctatgata 285  Q
    |||||||||||| |||||||||||||    
T  16190399 gaatcctccgaagttctcctatgata 16190424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 38 - 282
Target Start/End: Complemental strand, 39546486 - 39546244
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaat-tcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||| ||||||||||||||||||| |  || ||||||||||| ||  |||| || ||||||||  |  ||||||| |||| ||||||||||||||      
T  39546486 tgatagagatttggcaagtgaaccaaaatt-attgaagtaataaataagatcgtatc-acgaggaccattgttaacttttactcagcaatttcattatcg 39546389  T
Q  137 aaaaggatgtataaatttatattagtgccctaggcagttgagttgattta-gtaacataaactaattaaaaacaataaagaattagtttttagaaaatta 235  Q
    ||| |||||||| || ||  |||  |||||||||||||||  ||| |||  ||||| |||||  |   ||||||||||| | || ||||| | || ||||    
T  39546388 aaa-ggatgtattaaattcaattgttgccctaggcagttggattggtttttgtaacgtaaacgcaaataaaacaataaa-agttggttttaaaaatatta 39546291  T
Q  236 gagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  39546290 gagagaagtatggttaagaccttcgaatcctccgaagttctcatatg 39546244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 239
Target Start/End: Complemental strand, 8435359 - 8435280
Alignment:
Q  160 agtgccctaggcagttgagttga-tttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattagaga 239  Q
    ||||||||||||||||||||||| ||| |||||||||||  | ||||||||||||| | || |||||||||||||||||||    
T  8435359 agtgccctaggcagttgagttgatttttgtaacataaacataataaaaacaataaa-agttggtttttagaaaattagaga 8435280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 27282301 - 27282351
Alignment:
Q  232 attagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||||||||||||||| ||||||| ||||||| ||||||||||    
T  27282301 attagagagaagtatggttaagactttcgaattctccgaagttctcctatg 27282351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 49716735 - 49716625
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 136  Q
    ||||||||| ||| |||||| ||||||  | ||||||||||||| ||| ||||| ||||||||||| ||  |||| ||||||||||||| ||| |||  |    
T  49716735 tgatagataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 49716636  T
Q  137 aaaaggatgta 147  Q
     ||||||||||    
T  49716635 taaaggatgta 49716625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Original strand, 22456684 - 22456736
Alignment:
Q  230 aaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||| ||||||  ||||| ||||||||||||||||||||| ||||||||||    
T  22456684 aaattaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 22456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Original strand, 45960522 - 45960580
Alignment:
Q  47 tttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    ||||||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  45960522 tttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 45960580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Complemental strand, 49147936 - 49147899
Alignment:
Q  245 atggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  49147936 atggtcaagaccttcgaatcctccgaagttctcctatg 49147899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 49720214 - 49720129
Alignment:
Q  41 tagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaa 125  Q
    |||||| ||| |||||| ||||||  | ||||||||||||| ||| ||||| ||||||||||| ||  |||| |||||||||||||    
T  49720214 tagataattgacaagtgtaccaaaaactatcgaagtaataataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 49720129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 15297385 - 15297345
Alignment:
Q  230 aaattagagagaagtatggttaagaccttcgaatcctccga 270  Q
    |||||| |||||| |||| ||||||||||||||||||||||    
T  15297385 aaattaaagagaaatatgattaagaccttcgaatcctccga 15297345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 21153301 - 21153269
Alignment:
Q  238 gagaagtatggttaagaccttcgaatcctccga 270  Q
    ||||| |||||||||||||||||||||||||||    
T  21153301 gagaaatatggttaagaccttcgaatcctccga 21153269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 31205194 - 31205126
Alignment:
Q  38 tgatagatattt-ggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||||||| |||||||| ||||||| | || |||||| ||||||  ||||| |||||||||||||    
T  31205194 tgatagatattttggcaagtgtaccaaatactattgaagtagtaaaaatatcgttcccacgaggactgt 31205126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 34552438 - 34552525
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaa-ttcgtttccacgaggactgtatttaacttctacttagcaa 125  Q
    ||||||||||||| |||||| ||||||  | ||||||||| ||| ||| ||||| ||||||||||| ||  |||| |||||||||||||    
T  34552438 tgatagatatttgacaagtgtaccaaaa-ctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaa 34552525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 38 - 285
Target Start/End: Original strand, 11 - 254
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 137  Q
    |||||||| ||||||||||||||||||  | ||||||||| |||| |||||||| |||||||||| ||  |||||| | ||||||||||||| |||| ||    
T  11 tgatagatttttggcaagtgaaccaaag-ctatcgaagtagtaaataattcgtt-ccacgaggaccgttgttaactacaacttagcaatttctttatcaa 108  T
Q  138 aaaggatgtataaatttatattagtgccctaggcagttgagttgatttagtaacataaactaattaaaaacaataaagaattagtttttagaaaattaga 237  Q
    ||||||| | | || ||  ||   |||||||||||||||||||| |||  |||||||||| |||||||||||||||| | || ||||| |||| ||||||    
T  109 aaaggatatgttaaattcaatggttgccctaggcagttgagttggtttt-taacataaacaaattaaaaacaataaa-agttggttttaagaatattaga 206  T
Q  238 gagaagtatggttaagaccttcgaatcctccgaaattctcctatgata 285  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||    
T  207 gagaagtatggttaagacattcgaatcctccgaatttctcctatgata 254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 283 - 322
Alignment:
Q  232 attagagagaagtatggttaagaccttcgaatcctccgaa 271  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  283 attagagagaagtatggttaagacattcgaatcctccgaa 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 5995 - 6054
Alignment:
Q  223 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  5995 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaggttctcctatg 6054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 33727 - 33849
Alignment:
Q  35 cactgatagatatttggcaagtgaaccaaattcgatcgaagtaataa-aaaattcgtttccacgaggactgtatttaacttctacttagcaatttcatta 133  Q
    ||||||||||||||||||||||| ||||||  | ||||||||| ||| ||| || || ||||||||||| ||  |||| ||||||||||||| ||| |||    
T  33727 cactgatagatatttggcaagtgtaccaaa-actatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctacttagcaagttcgtta 33825  T
Q  134 ttaaaaaggatgta-taaatttat 156  Q
      | |||||||||| |||||||||    
T  33826 aaataaaggatgtactaaatttat 33849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 2794 - 2847
Alignment:
Q  229 aaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||  |||||||||    
T  2794 aaaatttgagagaagtatcgttaagacctttgaatcctccgaagctctcctatg 2847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 2627 - 2728
Alignment:
Q  46 atttggcaagtgaaccaaattcgatcgaagtaataaaaaat-tcgtttccacgaggactgtatttaacttctacttagcaatttcattattaaaaaggat 144  Q
    |||||||||||| ||||||  | |||||||||||||| ||  |||| ||||||||||| ||  |||||||||||| ||||||||| ||| | ||||||||    
T  2627 atttggcaagtggaccaaaa-ctatcgaagtaataaataagatcgtatccacgaggaccgttgttaacttctactcagcaatttcgtta-tcaaaaggat 2724  T
Q  145 gtat 148  Q
    ||||    
T  2725 gtat 2728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 105
Target Start/End: Complemental strand, 19752 - 19684
Alignment:
Q  38 tgatagatattt-ggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgt 105  Q
    |||||||||||| |||||||| ||||||| | ||||||||| ||||||  ||||| |||||||||||||    
T  19752 tgatagatattttggcaagtgtaccaaatactatcgaagtagtaaaaatatcgttcccacgaggactgt 19684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 133
Target Start/End: Complemental strand, 3739 - 3656
Alignment:
Q  47 tttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcatta 133  Q
    ||||||||||| ||||| ||| |||||||||||||||  || || ||||||||||| ||  |||||||||||| |||||||| ||||    
T  3739 tttggcaagtgtaccaa-ttctatcgaagtaataaaa--tttgtatccacgaggaccgttgttaacttctactcagcaatttaatta 3656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 2754 - 2695
Alignment:
Q  223 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||  |||||||| ||||||||| ||||||||||||| || | |||||||||    
T  2754 ttttagaaaatctgagagaagaatggttaagtccttcgaatcctctgatactctcctatg 2695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 7177 - 7236
Alignment:
Q  223 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaaattctcctatg 282  Q
    |||||||||||  |||||||| ||||||||| ||||||||||||| || | |||||||||    
T  7177 ttttagaaaatctgagagaagaatggttaagtccttcgaatcctctgatactctcctatg 7236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 111
Target Start/End: Original strand, 65087 - 65160
Alignment:
Q  38 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaa 111  Q
    |||||||  ||||||||||||||||||| | ||| ||||| ||||||  ||||| |||||| |||||| |||||    
T  65087 tgatagaattttggcaagtgaaccaaatactatccaagtagtaaaaatatcgttcccacgatgactgtttttaa 65160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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