View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_26 (Length: 302)
Name: NF1159_low_26
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 8072349 - 8072131
Alignment:
| Q |
1 |
cctttttaaaccttaggttattttaaaaaagaatgcatttgacacaaatcaagtcatatcttaaaagaaatatataatttggtccaccaccatgtacctt |
100 |
Q |
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| T |
8072349 |
cctttttaaaccttaggttattttaaaaaagaatgcatttgacacaaatcaagtcatatcttaaaagaaatatataatttggtccaccaccatgtacctt |
8072250 |
T |
|
| Q |
101 |
ctgaggttgccattgggtctgtctcgtcaacttttttctgagcagnnnnnnnatcaactactgggaatggatcctcgtgcttggaagctttagtagcagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
8072249 |
ctgaggttgccattgggtctgtctcgtcaacttttttctgagcagttttgttatcaactaccgggattggatcctcgtgcttggaagctttagtagcagg |
8072150 |
T |
|
| Q |
201 |
gacctgtgaggcttatatt |
219 |
Q |
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||||||||||||||||||| |
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| T |
8072149 |
gacctgtgaggcttatatt |
8072131 |
T |
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