View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_28 (Length: 298)
Name: NF1159_low_28
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_28 |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 7384501 - 7384787
Alignment:
| Q |
11 |
acaaactacaactatgccacgtgtacgatgaccaatagaggagtttgcaagtacaatggtaataataatcatattaagtagcctatgatcaactttgaac |
110 |
Q |
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| T |
7384501 |
acaaactacaactatgccacgtgtacgatgaccaatagagaagcttgcaagtacaatggtaataataatcatattaagtagcctatgatcaactttgaac |
7384600 |
T |
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| Q |
111 |
ttgcatgttgacaacggatataagtctcctataaataatattcttcaccatatatataacataatgtcaaccgaagaagttaaacttctatccaaaattg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7384601 |
ttgcatgttgacaacggatataagtctcctataaataatattcttcaccatatatataagataatgtcaaccgaagaagttaaacttctatccaaaattg |
7384700 |
T |
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| Q |
211 |
caacttcaagacgagataattagaattgtcttatggaattaattcaaagcattattagatattataaagtatataagaatagagagaa |
298 |
Q |
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| T |
7384701 |
caacttcaagacgagataattagaattgtc-tatgaaattaattcaacgcattattaaatattataaattatataagaatagagagaa |
7384787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 7394666 - 7394723
Alignment:
| Q |
241 |
ttatggaattaattcaaagcattattagatattataaagtatataagaatagagagaa |
298 |
Q |
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| T |
7394666 |
ttatgaaattaatccaaagcattgctagatattataaagtatataaaaatagagagaa |
7394723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 22274972 - 22274915
Alignment:
| Q |
241 |
ttatggaattaattcaaagcattattagatattataaagtatataagaatagagagaa |
298 |
Q |
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| T |
22274972 |
ttatgaaattaatccaaagcattgcaagatattgtaaagtatataagaatagagagaa |
22274915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Complemental strand, 42940023 - 42939966
Alignment:
| Q |
241 |
ttatggaattaattcaaagcattattagatattataaagtatataagaatagagagaa |
298 |
Q |
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| T |
42940023 |
ttatgaaattaatccaaagcattgcaagatattgtaaagtatataagaatagagagaa |
42939966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 12753607 - 12753664
Alignment:
| Q |
241 |
ttatggaattaattcaaagcattattagatattataaagtatataagaatagagagaa |
298 |
Q |
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||||| ||||||| || |||||| |||||||| |||||||||||||||||||||||| |
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| T |
12753607 |
ttatgaaattaatccagagcattgctagatattgtaaagtatataagaatagagagaa |
12753664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 13639856 - 13639800
Alignment:
| Q |
242 |
tatggaattaattcaaagcattattagatattataaagtatataagaatagagagaa |
298 |
Q |
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|||| ||||||| |||| ||||| |||||||||||| ||||||||||||||||||| |
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| T |
13639856 |
tatgaaattaatctaaagtattataagatattataaaatatataagaatagagagaa |
13639800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 298
Target Start/End: Original strand, 24228236 - 24228267
Alignment:
| Q |
267 |
agatattataaagtatataagaatagagagaa |
298 |
Q |
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| T |
24228236 |
agatattataaagtatataagaatagagagaa |
24228267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 267 - 298
Target Start/End: Complemental strand, 40786832 - 40786801
Alignment:
| Q |
267 |
agatattataaagtatataagaatagagagaa |
298 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40786832 |
agatattataaagtatataagaatagagagaa |
40786801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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