View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_29 (Length: 297)
Name: NF1159_low_29
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_29 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 74 - 297
Target Start/End: Complemental strand, 4725350 - 4725127
Alignment:
| Q |
74 |
caaacatactcttaccgtctcaaatatacactaaactcatttttacatcgcaattttttcaaccttcaaagctttctcttcccttcccctccaaacttgc |
173 |
Q |
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| T |
4725350 |
caaacatactcttaccgtctcaaatatacactaaactcagttttacatcgcaattttttcaaccctcaaagctttctcttccctttctctccaaactcgc |
4725251 |
T |
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| Q |
174 |
aaacaaaagcctaaatatacaatattttatacatcaatagtcgtgnnnnnnngaagtttaattctttttctgaccggccctttaatttttacattatatt |
273 |
Q |
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| T |
4725250 |
aaacaaaagtctaaatatacaatattttatacatcaatactcgtgtttttttgaagtttaattctttttctgaccggccctttaatttttacattatatt |
4725151 |
T |
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| Q |
274 |
gaagtgttagccattcaaccaatt |
297 |
Q |
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| T |
4725150 |
gaagtgttagcctttcaaccaatt |
4725127 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 38568542 - 38568576
Alignment:
| Q |
155 |
ccttcccctccaaacttgcaaacaaaagcctaaat |
189 |
Q |
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| T |
38568542 |
ccttcccctccaaactcgcaaacaaaagcctaaat |
38568576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 181
Target Start/End: Original strand, 41923386 - 41923419
Alignment:
| Q |
148 |
tctcttcccttcccctccaaacttgcaaacaaaa |
181 |
Q |
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| T |
41923386 |
tctcttcccttcccctccaaacttccaaacaaaa |
41923419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 7398955 - 7398987
Alignment:
| Q |
148 |
tctcttcccttcccctccaaacttgcaaacaaa |
180 |
Q |
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| T |
7398955 |
tctcctcccttcccctccaaacttgcaaacaaa |
7398987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 180
Target Start/End: Original strand, 25073426 - 25073455
Alignment:
| Q |
151 |
cttcccttcccctccaaacttgcaaacaaa |
180 |
Q |
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| T |
25073426 |
cttcccttcccctccaaacttgcaaacaaa |
25073455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 180
Target Start/End: Original strand, 9054712 - 9054740
Alignment:
| Q |
152 |
ttcccttcccctccaaacttgcaaacaaa |
180 |
Q |
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| T |
9054712 |
ttcccttcccctccaaacttgcaaacaaa |
9054740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 188
Target Start/End: Original strand, 14272194 - 14272234
Alignment:
| Q |
148 |
tctcttcccttcccctccaaacttgcaaacaaaagcctaaa |
188 |
Q |
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| T |
14272194 |
tctcttcccttcccctccatactctcaaacaaaagcctaaa |
14272234 |
T |
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