View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1159_low_3 (Length: 572)
Name: NF1159_low_3
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 305 - 483
Target Start/End: Original strand, 19799000 - 19799176
Alignment:
| Q |
305 |
aaagtgtgaaa-tgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatctaagaaggattgtactatcctta |
403 |
Q |
| |
|
||||||||||| | ||||||||||| || ||| |||||||||||| |||| ||||||| | ||||| |||||||||| | ||||||||| |||||| | |
|
|
| T |
19799000 |
aaagtgtgaaaattattcattaact-gaaaaaggattacaagatagtata--tatactagatgctaattgtactatcttaagaggattgtattatcctca |
19799096 |
T |
|
| Q |
404 |
agctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaactatcatt |
483 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
19799097 |
agctaaagtacaatgtaaaactagttacttgtactacaagatttctcactattatccttattataatttgaactatcatt |
19799176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 292 - 491
Target Start/End: Original strand, 8124815 - 8125013
Alignment:
| Q |
292 |
taagaatgggataaaagtgtgaaatgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatctaagaaggatt |
391 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||| ||||||||| || |||| ||||||| | ||||| ||||||| || | |||||| |
|
|
| T |
8124815 |
taagaatgtgataaaagtgtgaaatgattcattaacc-gaaaaaggattacaaggtagtata--tatactagatgctaattgtactaccttaagaggatt |
8124911 |
T |
|
| Q |
392 |
gtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatcc--ttattatcatttgaactatcattatgcaa |
489 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||| || |||||| ||||||||||||||||||||||||| || |
|
|
| T |
8124912 |
gtactatcctcaagctaaagtacaatgtaaatctagttacttgtactacaagttttcttgctgttatccatatattatcatttgaactatcattatgtaa |
8125011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 366 - 483
Target Start/End: Original strand, 19807113 - 19807230
Alignment:
| Q |
366 |
gctaaatgtactatctaagaaggattgtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttatt |
465 |
Q |
| |
|
||||| |||||||||| | |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
19807113 |
gctaattgtactatcttaagaggattgtactatcctcaagctaaagtacaatgtaaaactagttacttgtgctacaaaatttctcactattatccttatt |
19807212 |
T |
|
| Q |
466 |
atcatttgaactatcatt |
483 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19807213 |
atcatttgaactatcatt |
19807230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 305 - 491
Target Start/End: Complemental strand, 17127426 - 17127241
Alignment:
| Q |
305 |
aaagtgtgaa-atgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatct--aagaaggattgtactatcct |
401 |
Q |
| |
|
|||||||||| |||||||||||||| | || || ||||| |||| |||||| | ||| | | |||||||||||||| |||| | ||||||||||||| |
|
|
| T |
17127426 |
aaagtgtgaatatgattcattaactgaaaaagtggttacaggatagtatataaa--ctatatgataaatgtactatctctaaga-gaattgtactatcct |
17127330 |
T |
|
| Q |
402 |
taagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaactatcattatgcaata |
491 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||| ||||| | ||| |||| |||||| |||||||| | ||| ||||||| |
|
|
| T |
17127329 |
taagctagagtaaaatgtaaa-ctaattacttgtactacaagttttctcattatcatccctattatgctttgaactgttattctgcaata |
17127241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 476
Target Start/End: Complemental strand, 17132303 - 17132133
Alignment:
| Q |
305 |
aaagtgtgaa-atgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatct--aagaaggattgtactatcct |
401 |
Q |
| |
|
|||||||||| |||||||||||||| | || || ||||| |||| |||||| | ||| | | |||||||||||||| |||| | ||||||||||||| |
|
|
| T |
17132303 |
aaagtgtgaatatgattcattaactgaaaaagtggttacaggatagtatataaa--ctatatgataaatgtactatctctaaga-gaattgtactatcct |
17132207 |
T |
|
| Q |
402 |
taagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaac |
476 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||||||| ||||| | ||| |||| |||||| ||||||| |
|
|
| T |
17132206 |
taagctagagtaaaatgtaaa-ctaattacttgtactacaagttttctcattatcatccctattatgctttgaac |
17132133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 84 - 216
Target Start/End: Original strand, 47718582 - 47718716
Alignment:
| Q |
84 |
aaaggtcatgtgagtaatgtttcaaaagtgagactttcggatcaatggatttagtagtagcttttgttatgggctccaaatgcattgcatga----aaac |
179 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| || |||| |||||||||||||||||| |||||||||||| ||||||||||||| |||| |
|
|
| T |
47718582 |
aaaggtcgtttgagtaatgtttcaaaagtgagacttttgggtcaa--gatttagtagtagcttttattatgggctccatatgcattgcatgaaaacaaac |
47718679 |
T |
|
| Q |
180 |
aagtacaagatggaaaatgcttggaagttcttcaatt |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
47718680 |
aagtacaagatggaaaatgctcggaagtttttcaatt |
47718716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 47746326 - 47746511
Alignment:
| Q |
29 |
aaatttgtggtttgaaacaaagcttttagacttttattatcattccagtcgtggaaaaggtcatgtgagtaatgtttcaaaagtgagactttcggatcaa |
128 |
Q |
| |
|
|||| |||||||||| ||||||||| ||| ||||||| ||||| | | ||| ||||||| | |||||||||||||||| |||||||||| || |||| |
|
|
| T |
47746326 |
aaatatgtggtttgagacaaagcttctagtcttttat---cattcgatttgtgtgaaaggtcgtttgagtaatgtttcaaa-gtgagacttttgggtcaa |
47746421 |
T |
|
| Q |
129 |
tggatttagtagtagcttttgttatgggctccaaatgc--attgcatgaaaacaagtacaagatggaaaatgcttggaagttcttcaatt |
216 |
Q |
| |
|
|||||||||||||| ||||||| || | | ||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47746422 |
tggatttagtagtaacttttgtcatatgttacaaatgcgcattgcatggaaacaagtacaagatggaaaatgctcggaagttcttcaatt |
47746511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 7e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 303 - 491
Target Start/End: Original strand, 34977444 - 34977630
Alignment:
| Q |
303 |
taaaagtgtgaaatgattcattaacttgagaaatgattacaagatattatatatatactaaaagctaaatgtactatctaagaaggattgtactatcctt |
402 |
Q |
| |
|
||||| |||||||||||||||||| ||| || |||||||||||| ||| |||| ||| | ||||| ||| |||||| | ||||||| |||||| || |
|
|
| T |
34977444 |
taaaaatgtgaaatgattcattaagatgaaaagggattacaagatagtatttata--ctataggctaattgtgctatctgaaaaggatt-tactattctc |
34977540 |
T |
|
| Q |
403 |
aagctaaagtacaatgtaaaa-ctaattacttgtactacaagatttcttactattatccttattatcatttgaactatcattatgcaata |
491 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||| |||||| ||||||||||| ||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
34977541 |
aagctaaagtacaatgtaaaaactagttacttgtagtacaagttttcttactatcatctttattatcatttgaattatcattatgtaata |
34977630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 366 - 491
Target Start/End: Original strand, 19913665 - 19913790
Alignment:
| Q |
366 |
gctaaatgtactatctaagaaggattgtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttatt |
465 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| ||||||||||| | | || |||| |
|
|
| T |
19913665 |
gctaattgtactatcttagaaggattgtactatcctcaacctaaagtacaatgtaatactaattacttgtactataagatttcttattttcatgcttagg |
19913764 |
T |
|
| Q |
466 |
atcatttgaactatcattatgcaata |
491 |
Q |
| |
|
||||| ||||||||||||||| |||| |
|
|
| T |
19913765 |
atcatgtgaactatcattatgtaata |
19913790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 19915273 - 19915375
Alignment:
| Q |
389 |
attgtactatccttaagctaaagtacaatgtaaaactaattacttgtactacaagatttcttactattatccttattatcatttgaactatcattatgca |
488 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| ||||||||||||||| || |||||||||| | | || |||| ||||||||||||||||||||| | |
|
|
| T |
19915273 |
attgtactatcctcaagctaaactacaatgtaatactaattacttgtacgacgagatttcttattttcatgcttaggatcatttgaactatcattatgta |
19915372 |
T |
|
| Q |
489 |
ata |
491 |
Q |
| |
|
||| |
|
|
| T |
19915373 |
ata |
19915375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 444
Target Start/End: Original strand, 15483602 - 15483644
Alignment:
| Q |
402 |
taagctaaagtacaatgtaaaactaattacttgtactacaaga |
444 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
15483602 |
taagctaaagtacaatacaaaactaattgcttgtactacaaga |
15483644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University