View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_32 (Length: 285)
Name: NF1159_low_32
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_32 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 5e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 156 - 285
Target Start/End: Complemental strand, 42950433 - 42950304
Alignment:
| Q |
156 |
aaatatcctatggttacagaggagtatgatcatggaaacaaaaagttccttgaaggtgctggactgctggaagtttttcgaatgctaggaaaatgaaaga |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42950433 |
aaatatcctatggttacagaggagtatgatcatggaaacaaaaagttccttgaaggtgctggactgctggaagtttttcgaatgctaggaaaatgaaaga |
42950334 |
T |
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| Q |
256 |
taacagtgttcgaatgctaggaaaagggaa |
285 |
Q |
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| T |
42950333 |
taacagtgttcgaatgctaggaaaatggaa |
42950304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 42950547 - 42950432
Alignment:
| Q |
11 |
caaaggcatatttagctgaataaattactggctgtaataattatgatcatgatgaaggatgatcaaagcagtgatgaaaacactaggggacaaagggtac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
42950547 |
caaaggcatatttagctgaataaattactggctgtaataattatgatcatgatgaaggacaatcaaagcagtgatgaaaacactaggggacaaagggtac |
42950448 |
T |
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| Q |
111 |
agaatgcagaaccgaa |
126 |
Q |
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|||||| ||||||||| |
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| T |
42950447 |
agaatgtagaaccgaa |
42950432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 2852144 - 2852094
Alignment:
| Q |
11 |
caaaggcatatttagctgaataaattactggctgtaataattatgatcatg |
61 |
Q |
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| T |
2852144 |
caaaggcatatttagctgaataaattactggctgtaataattattatcatg |
2852094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 2904176 - 2904126
Alignment:
| Q |
11 |
caaaggcatatttagctgaataaattactggctgtaataattatgatcatg |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2904176 |
caaaggcatatttagctgaataaattactggctgtaataattattatcatg |
2904126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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