View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_low_33 (Length: 282)

Name: NF1159_low_33
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_low_33
NF1159_low_33
[»] chr1 (16 HSPs)
chr1 (114-260)||(39869890-39870035)
chr1 (110-234)||(39869332-39869456)
chr1 (110-250)||(36682174-36682315)
chr1 (109-233)||(36681525-36681650)
chr1 (30-90)||(5876212-5876272)
chr1 (110-154)||(19790840-19790884)
chr1 (109-159)||(15601467-15601517)
chr1 (110-155)||(2071475-2071520)
chr1 (139-190)||(19534096-19534147)
chr1 (113-155)||(49359642-49359684)
chr1 (109-152)||(2070786-2070829)
chr1 (167-249)||(33082208-33082290)
chr1 (132-170)||(14235973-14236011)
chr1 (132-170)||(14237371-14237409)
chr1 (113-155)||(49361980-49362022)
chr1 (110-155)||(50546061-50546106)
[»] chr3 (11 HSPs)
chr3 (109-234)||(31595784-31595909)
chr3 (109-260)||(31595134-31595271)
chr3 (110-249)||(25081455-25081595)
chr3 (118-191)||(38018633-38018707)
chr3 (110-155)||(48058275-48058320)
chr3 (109-154)||(54516961-54517006)
chr3 (113-165)||(29749328-29749380)
chr3 (139-190)||(36864564-36864615)
chr3 (132-170)||(11617438-11617476)
chr3 (110-155)||(36244153-36244198)
chr3 (114-155)||(48058962-48059003)
[»] chr8 (15 HSPs)
chr8 (109-250)||(37550201-37550343)
chr8 (109-233)||(37550867-37550992)
chr8 (110-259)||(39320931-39321081)
chr8 (116-240)||(16664639-16664764)
chr8 (148-232)||(22589713-22589798)
chr8 (148-259)||(7089756-7089868)
chr8 (110-228)||(23017264-23017384)
chr8 (109-165)||(36697681-36697737)
chr8 (110-165)||(16723683-16723738)
chr8 (123-155)||(44495131-44495163)
chr8 (109-179)||(37550998-37551068)
chr8 (110-155)||(24287617-24287662)
chr8 (110-158)||(23546145-23546193)
chr8 (110-158)||(23546906-23546954)
chr8 (109-165)||(43306685-43306741)
[»] chr4 (10 HSPs)
chr4 (110-250)||(33351370-33351511)
chr4 (109-233)||(33352035-33352160)
chr4 (118-170)||(49574732-49574784)
chr4 (110-170)||(19638103-19638163)
chr4 (110-153)||(21436558-21436601)
chr4 (118-155)||(33581140-33581177)
chr4 (112-170)||(39832014-39832072)
chr4 (110-155)||(43428476-43428521)
chr4 (110-146)||(20422946-20422982)
chr4 (112-155)||(49648239-49648283)
[»] chr2 (5 HSPs)
chr2 (109-252)||(42112276-42112420)
chr2 (215-250)||(1729616-1729651)
chr2 (112-153)||(25616852-25616893)
chr2 (110-155)||(30266321-30266366)
chr2 (118-155)||(30784884-30784921)
[»] scaffold0434 (1 HSPs)
scaffold0434 (148-235)||(12741-12829)
[»] chr7 (3 HSPs)
chr7 (118-165)||(29064747-29064794)
chr7 (109-155)||(19068464-19068510)
chr7 (110-155)||(45432966-45433011)
[»] chr6 (5 HSPs)
chr6 (109-155)||(15997538-15997584)
chr6 (109-153)||(20756414-20756458)
chr6 (110-170)||(20508611-20508671)
chr6 (118-155)||(4279094-4279131)
chr6 (118-155)||(4284352-4284389)
[»] chr5 (8 HSPs)
chr5 (110-155)||(33574029-33574074)
chr5 (109-165)||(35424265-35424321)
chr5 (112-155)||(10470062-10470105)
chr5 (110-170)||(14098496-14098556)
chr5 (123-155)||(30576042-30576074)
chr5 (114-175)||(14099228-14099290)
chr5 (110-154)||(10470849-10470894)
chr5 (112-155)||(26015501-26015545)
[»] scaffold0285 (1 HSPs)
scaffold0285 (109-179)||(17518-17588)
[»] scaffold1370 (1 HSPs)
scaffold1370 (110-157)||(202-249)
[»] scaffold0006 (1 HSPs)
scaffold0006 (109-155)||(223806-223852)
[»] scaffold0159 (1 HSPs)
scaffold0159 (110-155)||(28154-28199)


Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 114 - 260
Target Start/End: Complemental strand, 39870035 - 39869890
Alignment:
Q  114 catatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcggctttaaaaccca 213  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||    
T  39870035 catatcaagtgagaggagtttttaaatgagagggtgagacgagtaattaacaac-atctgattaaaaccaacggttaagatgcttcagatttaaaaccca 39869937  T
Q  214 ctaaaaccatgtgattaatttccccttcttctcaagcatcgcttccc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  39869936 ctaaaaccatgtgattaatttccccttcttctcaagcatcgcttccc 39869890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 110 - 234
Target Start/End: Original strand, 39869332 - 39869456
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcggctttaaaa 209  Q
    |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||| |||||||||    
T  39869332 agggcatatcaaattagatgagtttttaaatgagagggtgagaggagtaattaacaactatttgattaaaaccaatggttaagatgcttcagctttaaaa 39869431  T
Q  210 cccactaaaaccatgtgattaattt 234  Q
       | ||||| ||||||||||||||    
T  39869432 tatattaaaatcatgtgattaattt 39869456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 110 - 250
Target Start/End: Complemental strand, 36682315 - 36682174
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggctttaa 207  Q
    |||||||||||| ||||||||||| ||| | ||||||  |||||||||||||||||||||||| ||||||| ||||||| |||||||| |||  ||||||    
T  36682315 agggcatatcaaatgagaggagttgttatagtgagaga-tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaa 36682217  T
Q  208 aacccactaaaaccatgtgattaatttccccttcttctcaagc 250  Q
    ||   ||||||||||| ||||||||||||||||||||||||||    
T  36682216 aatatactaaaaccatatgattaatttccccttcttctcaagc 36682174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 36681525 - 36681650
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggcttta 206  Q
    |||| |||||||||||||||||||| ||| | ||||||  |||||||||||||||| ||||||  ||||||| |||||||||||||||| ||| ||||||    
T  36681525 gaggacatatcaagtgagaggagttgttatagtgagaga-tgagaggagtaattaataaccattcgattaaatccaacggttaagatgctttcagcttta 36681623  T
Q  207 aaacccactaaaaccatgtgattaatt 233  Q
    |||   | |||||||||||||||||||    
T  36681624 aaatataataaaaccatgtgattaatt 36681650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 5876272 - 5876212
Alignment:
Q  30 agtaaatgatttaaaaatatcttaaagtgaataagtagagtgttcgggattccaacaacaa 90  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||    
T  5876272 agtaaatgatttaaaaacatcttaaagtgaacaagtggagtgttcgggattccaacaacaa 5876212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Original strand, 19790840 - 19790884
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagg 154  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  19790840 agggcatatcaagtgagaggagttttaaaatgagagggtgagagg 19790884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 159
Target Start/End: Complemental strand, 15601517 - 15601467
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaa 159  Q
    |||||||||||||||||||||  ||||||||||||||| ||||||||||||    
T  15601517 gagggcatatcaagtgagagggctttttaaatgagaggatgagaggagtaa 15601467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 2071520 - 2071475
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  2071520 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 2071475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 19534096 - 19534147
Alignment:
Q  139 atgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggtta 190  Q
    ||||||||||||||||||||| ||| ||||||| |||| |||||||||||||    
T  19534096 atgagagggtgagaggagtaaataataaccatcagatttaaaccaacggtta 19534147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 49359642 - 49359684
Alignment:
Q  113 gcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||| |||| |||||||||||||||||||||||||||||||||    
T  49359642 gcatttcaaatgagaggagtttttaaatgagagggtgagagga 49359684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 109 - 152
Target Start/End: Original strand, 2070786 - 2070829
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgaga 152  Q
    ||||||||||||||||||| || |||| ||||||||||||||||    
T  2070786 gagggcatatcaagtgagaagacttttaaaatgagagggtgaga 2070829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 249
Target Start/End: Original strand, 33082208 - 33082290
Alignment:
Q  167 ccatctgattaaaaccaacggttaagatgctt-cggctttaaaacccactaaaaccatgtgattaatttccccttcttctcaag 249  Q
    ||||| |||||||| ||||||||||||| ||| |  |||||||||| | ||||||||||||||| |||| | ||||||||||||    
T  33082208 ccatcagattaaaatcaacggttaagatcctttcaactttaaaaccaattaaaaccatgtgatt-attttctcttcttctcaag 33082290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 14235973 - 14236011
Alignment:
Q  132 tttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  14235973 tttttaaatgagagggtgagaggagtaaataacagccat 14236011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Complemental strand, 14237409 - 14237371
Alignment:
Q  132 tttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  14237409 tttttaaatgagagggtgagaggagtaaataacatccat 14237371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 49362022 - 49361980
Alignment:
Q  113 gcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||| |||| |||||||||||||||||||||| ||||||||||    
T  49362022 gcatttcaaatgagaggagtttttaaatgagaaggtgagagga 49361980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 50546106 - 50546061
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||||||||||||| |||||| |||| |||||||||||| ||||||    
T  50546106 agggcatatcaagtaagaggacttttaaaatgagagggtaagagga 50546061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 31595909 - 31595784
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcggctttaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31595909 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcagctttaaa 31595810  T
Q  209 acccactaaaaccatgtgattaattt 234  Q
    ||||||||||||||||||||||||||    
T  31595809 acccactaaaaccatgtgattaattt 31595784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 31595134 - 31595271
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcggctttaaa 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||| ||||||||    
T  31595134 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaacc--------------aacggttaagatgcttcagctttaaa 31595219  T
Q  209 acccactaaaaccatgtgattaatttccccttcttctcaagcatcgcttccc 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31595220 acccactaaaaccatgtgattaatttccccttcttctcaagcatcgcttccc 31595271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 249
Target Start/End: Complemental strand, 25081595 - 25081455
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggctttaa 207  Q
    |||||||||||||||||||||||| ||| | ||||||  |||||||| | ||| | ||||||| |||||||||||||||||||||||| ||| |||||||    
T  25081595 agggcatatcaagtgagaggagttgttatagtgagaga-tgagaggattgatttataaccatcagattaaaaccaacggttaagatgctttcagctttaa 25081497  T
Q  208 aacccactaaaaccatgtgattaatttccccttcttctcaag 249  Q
    ||   | |||||||||||||||| |||| |||||||||||||    
T  25081496 aattaattaaaaccatgtgattattttctccttcttctcaag 25081455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 191
Target Start/End: Original strand, 38018633 - 38018707
Alignment:
Q  118 tcaagtgagaggagttttta-aatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaa 191  Q
    |||||||||||||||   || |||||||||||||||||||||||||||| ||||| ||||||| || ||||||||    
T  38018633 tcaagtgagaggagtggctacaatgagagggtgagaggagtaattaacagccatccgattaaatcctacggttaa 38018707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 48058275 - 48058320
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  48058275 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 48058320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 154
Target Start/End: Original strand, 54516961 - 54517006
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagagg 154  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||    
T  54516961 gagggcatttcaaatgagaggagtttttaaatgagagggtgagagg 54517006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 113 - 165
Target Start/End: Complemental strand, 29749380 - 29749328
Alignment:
Q  113 gcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 165  Q
    |||| |||| |||||||| |||||||||||||||||||||||||||| |||||    
T  29749380 gcatttcaaatgagaggactttttaaatgagagggtgagaggagtaaataaca 29749328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 36864615 - 36864564
Alignment:
Q  139 atgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggtta 190  Q
    ||||||||||||||||||||| ||| ||||||| |||| |||||||||||||    
T  36864615 atgagagggtgagaggagtaaataataaccatcagatttaaaccaacggtta 36864564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 11617438 - 11617476
Alignment:
Q  132 tttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  11617438 tttttaaatgagagggtgagaggagtaaataacaaccat 11617476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 36244198 - 36244153
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||| |||| ||||| || ||||||||||||||||||||||||    
T  36244198 agggcatttcaaatgagatgattttttaaatgagagggtgagagga 36244153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 48059003 - 48058962
Alignment:
Q  114 catatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||||||||| |||||| |||| |||||||||||||||||||    
T  48059003 catatcaagtaagaggaattttaaaatgagagggtgagagga 48058962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 109 - 250
Target Start/End: Original strand, 37550201 - 37550343
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggcttta 206  Q
    ||||||||||||| ||||||||||| ||| | ||||||  |||||||||||||||||||||||| ||||||| ||||||| |||||||| |||  |||||    
T  37550201 gagggcatatcaaatgagaggagttgttatagtgagaga-tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaacttta 37550299  T
Q  207 aaacccactaaaaccatgtgattaatttccccttcttctcaagc 250  Q
    |||   ||||||||||| ||||||||||||||||||||| ||||    
T  37550300 aaatatactaaaaccatatgattaatttccccttcttcttaagc 37550343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 37550992 - 37550867
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggcttta 206  Q
    |||| |||||||||||||||||||| ||| | ||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||||| ||| ||||||    
T  37550992 gaggacatatcaagtgagaggagttgttatagtgagaga-tgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagcttta 37550894  T
Q  207 aaacccactaaaaccatgtgattaatt 233  Q
    |||   | |||||||||||||||||||    
T  37550893 aaatataataaaaccatgtgattaatt 37550867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 110 - 259
Target Start/End: Original strand, 39320931 - 39321081
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggctttaa 207  Q
    |||||||||||||||||| || || ||| | ||||||  ||||||||||||||| |||||||| ||||||| |||| || |||||||| ||| |||||||    
T  39320931 agggcatatcaagtgagatgacttgttatagtgagaga-tgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcagctttaa 39321029  T
Q  208 aacccactaaaaccatgtgattaatttccccttcttctcaagcatcgcttcc 259  Q
    ||   |||||||||| ||||||||| |||| |||||||||||| | ||||||    
T  39321030 aatatactaaaaccacgtgattaatctcccattcttctcaagcgtggcttcc 39321081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 16664639 - 16664764
Alignment:
Q  116 tatcaagtgagaggagttttta-aatgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcg-gctttaaaaccca 213  Q
    |||||||| |||||| |||||| ||||||||| |||||||||| |||| || ||||||||||||| ||||||||||| |||||| |  | ||||||||      
T  16664639 tatcaagttagaggactttttataatgagagg-tgagaggagtgattagcatccatctgattaaatccaacggttaaaatgctttgatcattaaaacctg 16664737  T
Q  214 ctaaaaccatgtgattaatttcccctt 240  Q
     ||||||||||||||||||||||||||    
T  16664738 ttaaaaccatgtgattaatttcccctt 16664764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 148 - 232
Target Start/End: Original strand, 22589713 - 22589798
Alignment:
Q  148 tgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggctttaaaacccactaaaaccatgtgattaat 232  Q
    |||||||||||||||||| |||||  |||||||||||| |||||||||| ||| ||||||||||| | ||||||||||||||||||    
T  22589713 tgagaggagtaattaacatccatcacattaaaaccaacagttaagatgctttcagctttaaaacctattaaaaccatgtgattaat 22589798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 259
Target Start/End: Complemental strand, 7089868 - 7089756
Alignment:
Q  148 tgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgcttcg-gctttaaaacccactaaaaccatgtgattaatttccccttcttctc 246  Q
    |||||| |||||||| |||||||| ||||||| |||| || ||||||||||   |||||||||   |||||||||||||||||||| |||| ||||||||    
T  7089868 tgagagaagtaattagcaaccatccgattaaatccaatggctaagatgcttttagctttaaaatatactaaaaccatgtgattaatctcccattcttctc 7089769  T
Q  247 aagcatcgcttcc 259  Q
    |||| | ||||||    
T  7089768 aagcgtggcttcc 7089756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 110 - 228
Target Start/End: Original strand, 23017264 - 23017384
Alignment:
Q  110 agggcatatcaa-gtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggcttta 206  Q
    |||||||||||| |||||||||||| ||| | ||||||  ||||||||| ||||| ||  |||| |||||||||||||||||||||||| |||  |||||    
T  23017264 agggcatatcaaagtgagaggagttgttatagtgagaga-tgagaggagcaattatcaggcatcagattaaaaccaacggttaagatgctttcaacttta 23017362  T
Q  207 aaacccactaaaaccatgtgat 228  Q
    ||||| | ||||||||||||||    
T  23017363 aaaccaattaaaaccatgtgat 23017384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 36697681 - 36697737
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 165  Q
    |||| ||| |||| |||||||| |||||||||||||||||||||||||||| |||||    
T  36697681 gaggacatttcaaatgagaggactttttaaatgagagggtgagaggagtaaataaca 36697737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 165
Target Start/End: Original strand, 16723683 - 16723738
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 165  Q
    ||||||| |||| |||||||| |||| ||||||||||||||||||||||| |||||    
T  16723683 agggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaataaca 16723738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 44495163 - 44495131
Alignment:
Q  123 tgagaggagtttttaaatgagagggtgagagga 155  Q
    |||||||||||||||||||||||||||||||||    
T  44495163 tgagaggagtttttaaatgagagggtgagagga 44495131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 37550998 - 37551068
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaa 179  Q
    |||||||| |||| |||||||  ||||||||||||||| |||||||||| | ||| ||||||  |||||||    
T  37550998 gagggcatttcaaatgagagggctttttaaatgagaggatgagaggagttaataagaaccattagattaaa 37551068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 24287662 - 24287617
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||| |||| |||||||  ||||||||||||||||||||||||    
T  24287662 agggcatttcaaatgagagggttttttaaatgagagggtgagagga 24287617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 23546145 - 23546193
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagta 158  Q
    ||||||| |||| |||||||   ||||||||||||||||||||||||||    
T  23546145 agggcatttcaaatgagagggcattttaaatgagagggtgagaggagta 23546193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 23546954 - 23546906
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagta 158  Q
    ||||||| |||| ||||||   |||||||||||||||||||||||||||    
T  23546954 agggcatttcaaatgagagagctttttaaatgagagggtgagaggagta 23546906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 43306685 - 43306741
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 165  Q
    |||||||| |||| |||||||| |||| |||||||||||||  |||||||| |||||    
T  43306685 gagggcatttcaaatgagaggatttttaaaatgagagggtggaaggagtaaataaca 43306741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 110 - 250
Target Start/End: Original strand, 33351370 - 33351511
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggctttaa 207  Q
    |||||||||||| ||||||||||| ||| | ||||||  |||||||||||||||||||||||| ||||||| ||||||| |||||||| |||  ||||||    
T  33351370 agggcatatcaaatgagaggagttgttatagtgagaga-tgagaggagtaattaacaaccatccgattaaatccaacggctaagatgctttcaactttaa 33351468  T
Q  208 aacccactaaaaccatgtgattaatttccccttcttctcaagc 250  Q
    ||   ||||||||||| ||||||||||||||||||||| ||||    
T  33351469 aatatactaaaaccatatgattaatttccccttcttcttaagc 33351511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 33352160 - 33352035
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgc-ttcggcttta 206  Q
    |||| |||||||||||||| ||||| ||| | ||||||  |||||||||||||||| ||||||| ||||||| |||||||||||||||| ||| ||||||    
T  33352160 gaggacatatcaagtgagatgagttgttatagtgagaga-tgagaggagtaattaataaccatccgattaaatccaacggttaagatgctttcagcttta 33352062  T
Q  207 aaacccactaaaaccatgtgattaatt 233  Q
    |||   | |||||||||||||||||||    
T  33352061 aaatataataaaaccatgtgattaatt 33352035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 49574784 - 49574732
Alignment:
Q  118 tcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    |||| |||||||| |||||||||||||||||||||||||||| ||||||||||    
T  49574784 tcaaatgagaggactttttaaatgagagggtgagaggagtaaataacaaccat 49574732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 19638103 - 19638163
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    ||||||| |||| |||||||| |||||||||||||||||||||||| ||| | ||||||||    
T  19638103 agggcatttcaaatgagaggaatttttaaatgagagggtgagaggattaaatcacaaccat 19638163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 21436558 - 21436601
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagag 153  Q
    ||||||| |||| |||||||||||||||||||||||||||||||    
T  21436558 agggcatttcaaatgagaggagtttttaaatgagagggtgagag 21436601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 33581177 - 33581140
Alignment:
Q  118 tcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33581177 tcaaatgagaggagtttttaaatgagagggtgagagga 33581140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 39832072 - 39832014
Alignment:
Q  112 ggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    ||||| ||||||||||| | ||||||||||||||| |||||||| | ||||| ||||||    
T  39832072 ggcatttcaagtgagagcactttttaaatgagaggatgagaggactcattaataaccat 39832014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 43428476 - 43428521
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||| | || |||||||| ||||||||||||||||||||||||    
T  43428476 agggcattttaaatgagaggactttttaaatgagagggtgagagga 43428521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 20422946 - 20422982
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagg 146  Q
    |||||||||||||||||| || |||||||||||||||    
T  20422946 agggcatatcaagtgagatgattttttaaatgagagg 20422982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 49648283 - 49648239
Alignment:
Q  112 ggcatatcaagtgagaggagttttta-aatgagagggtgagagga 155  Q
    |||||||||||||||||||||  ||| ||||||||||||||||||    
T  49648283 ggcatatcaagtgagaggagtagttataatgagagggtgagagga 49648239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 109 - 252
Target Start/End: Complemental strand, 42112420 - 42112276
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgattaaaaccaacggttaagatgctt-cggcttta 206  Q
    |||||||||||||||||||||| || ||| | ||||||  ||||||||||||||| |||||||| ||||||| |||| || |||||||||| | ||||||    
T  42112420 gagggcatatcaagtgagaggacttcttatagtgagaga-tgagaggagtaattagcaaccatccgattaaatccaatggctaagatgctttcagcttta 42112322  T
Q  207 aaacccactaaaaccatgtgattaatttccccttcttctcaagcat 252  Q
    |||   |||||||||||||||||||| |||| ||||||||||||||    
T  42112321 aaatatactaaaaccatgtgattaatctcccattcttctcaagcat 42112276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 1729616 - 1729651
Alignment:
Q  215 taaaaccatgtgattaatttccccttcttctcaagc 250  Q
    |||||| |||||||||||||||||||||||||||||    
T  1729616 taaaacaatgtgattaatttccccttcttctcaagc 1729651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 25616852 - 25616893
Alignment:
Q  112 ggcatatcaagtgagaggagtttttaaatgagagggtgagag 153  Q
    ||||| |||| |||||||| ||||||||||||||||||||||    
T  25616852 ggcatttcaaatgagaggactttttaaatgagagggtgagag 25616893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 30266321 - 30266366
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||| |||| |||||| | ||||||||||||||||||||||||    
T  30266321 agggcatttcaaatgagagcactttttaaatgagagggtgagagga 30266366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 30784884 - 30784921
Alignment:
Q  118 tcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  30784884 tcaaatgagaggactttttaaatgagagggtgagagga 30784921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 12829 - 12741
Alignment:
Q  148 tgagaggagtaattaacaaccatctgattaaaaccaacggttaagat-gcttcggctttaaaacccactaaaaccatgtgattaatttc 235  Q
    ||||||||| |||||||||||||| ||||||| |||| ||||||||| | |||  ||||||||   |||||||||||||||||||||||    
T  12829 tgagaggagcaattaacaaccatccgattaaatccaatggttaagatggtttcaactttaaaatatactaaaaccatgtgattaatttc 12741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 165
Target Start/End: Original strand, 29064747 - 29064794
Alignment:
Q  118 tcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 165  Q
    |||| ||||||||||||||||||||||||||||||||||||| |||||    
T  29064747 tcaaatgagaggagtttttaaatgagagggtgagaggagtaaataaca 29064794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 19068464 - 19068510
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  19068464 gagggcatttcaaatgagaggactttttaaatgagagggtgagagga 19068510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 45433011 - 45432966
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||| ||||||||||||| ||||||||||||||| ||||||||    
T  45433011 agggcatttcaagtgagaggattttttaaatgagaggatgagagga 45432966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 15997584 - 15997538
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||    
T  15997584 gagggcatttcaaatgagaggagtttttaaatgagagggtgagagga 15997538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 20756458 - 20756414
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagag 153  Q
    |||||||| |||| |||||||||||||||||||||||||||||||    
T  20756458 gagggcatttcaaatgagaggagtttttaaatgagagggtgagag 20756414  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 20508611 - 20508671
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    ||||||| |||| ||||| || |||||||||||||||||||||||| ||| | ||||||||    
T  20508611 agggcatttcaaatgagatgactttttaaatgagagggtgagaggattaaatcacaaccat 20508671  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 4279094 - 4279131
Alignment:
Q  118 tcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  4279094 tcaaatgagaggactttttaaatgagagggtgagagga 4279131  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 4284389 - 4284352
Alignment:
Q  118 tcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  4284389 tcaaatgagaggactttttaaatgagagggtgagagga 4284352  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 155
Target Start/End: Complemental strand, 33574074 - 33574029
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||    
T  33574074 agggcatatcaagtgagaggacttttaaaatgagagggtgagagga 33574029  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 109 - 165
Target Start/End: Original strand, 35424265 - 35424321
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaaca 165  Q
    |||||||| |||| |||||||| |||| ||||||||||||||||||||||| |||||    
T  35424265 gagggcatttcaaatgagaggacttttaaaatgagagggtgagaggagtaaataaca 35424321  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 10470062 - 10470105
Alignment:
Q  112 ggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  10470062 ggcatatcaagtgagaggattttttaaatgagaggatgagagga 10470105  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 14098496 - 14098556
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccat 170  Q
    ||||||| | || |||||||| |||||||||||||||||||||||| ||| | ||||||||    
T  14098496 agggcattttaaatgagaggactttttaaatgagagggtgagaggattaaatcacaaccat 14098556  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 30576074 - 30576042
Alignment:
Q  123 tgagaggagtttttaaatgagagggtgagagga 155  Q
    |||||||||||||||||||||||||||||||||    
T  30576074 tgagaggagtttttaaatgagagggtgagagga 30576042  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 175
Target Start/End: Complemental strand, 14099290 - 14099228
Alignment:
Q  114 catatcaagtgagaggagtttttaaa-tgagagggtgagaggagtaattaacaaccatctgat 175  Q
    ||||||||||||||||||| ||||   |||||| ||||||||| ||||||| |||||||||||    
T  14099290 catatcaagtgagaggagtatttattgtgagagagtgagaggaataattaataaccatctgat 14099228  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 10470894 - 10470849
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaa-atgagagggtgagagg 154  Q
    ||||||||||||||||||||| | ||||| ||||||||||||||||    
T  10470894 agggcatatcaagtgagaggactatttaatatgagagggtgagagg 10470849  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 155
Target Start/End: Original strand, 26015501 - 26015545
Alignment:
Q  112 ggcatatcaagtgagaggagt-ttttaaatgagagggtgagagga 155  Q
    |||||||||||||||||||||   |||||||||||||||||||||    
T  26015501 ggcatatcaagtgagaggagtaacttaaatgagagggtgagagga 26015545  T

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Target: scaffold0285 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 17588 - 17518
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagaggagtaattaacaaccatctgattaaa 179  Q
    |||||||| |||| |||||||| ||||||||||||||| |||||||||| | ||| ||||||  |||||||    
T  17588 gagggcatttcaaatgagaggattttttaaatgagaggatgagaggagttaataagaaccattagattaaa 17518  T

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Target: scaffold1370 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 157
Target Start/End: Original strand, 202 - 249
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagaggagt 157  Q
    ||||||| |||| |||||||| ||||||||||||||| ||||||||||    
T  202 agggcatttcaaatgagaggactttttaaatgagaggatgagaggagt 249  T

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Target: scaffold0006 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 223806 - 223852
Alignment:
Q  109 gagggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||||||||||| |||||| |||| ||||||||||||| |||||    
T  223806 gagggcatatcaagtaagaggacttttaaaatgagagggtgggagga 223852  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 155
Target Start/End: Original strand, 28154 - 28199
Alignment:
Q  110 agggcatatcaagtgagaggagtttttaaatgagagggtgagagga 155  Q
    ||||||| |||| | |||||| ||||||||||||||||||||||||    
T  28154 agggcatttcaaataagaggactttttaaatgagagggtgagagga 28199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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