View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_low_35 (Length: 275)

Name: NF1159_low_35
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_low_35
NF1159_low_35
[»] chr5 (1 HSPs)
chr5 (1-163)||(3005808-3005958)
[»] chr4 (2 HSPs)
chr4 (50-158)||(1659383-1659491)
chr4 (50-158)||(32225663-32225771)
[»] chr3 (1 HSPs)
chr3 (165-265)||(7007843-7007943)
[»] chr8 (1 HSPs)
chr8 (165-264)||(19643791-19643890)
[»] chr7 (2 HSPs)
chr7 (1-38)||(44579744-44579781)
chr7 (1-38)||(7853644-7853681)
[»] chr1 (1 HSPs)
chr1 (165-265)||(4341627-4341727)


Alignment Details
Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 3005808 - 3005958
Alignment:
Q  1 tataaattatagatagataatattgcatatatctacttagtgattgccttagtgattgcgaatgtttgttatttaaaagcacattgttaacgcatttgta 100  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||  |||||||||||||||| |||||||    
T  3005808 tataaattatagatagataatattgcatatatctactta------------gtgattgcgaatgtttgttatttctaagcacattgttaacgtatttgta 3005895  T
Q  101 cctattcgtcatttataagagattatatttaactcagtcacaatgctttatcgaataatttac 163  Q
    |||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3005896 cctattcgccgtttataagagattatatttaactcaatcacaatgctttatcgaataatttac 3005958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 1659491 - 1659383
Alignment:
Q  50 tagtgattgcgaatgtttgttatttaaaagcacattgttaacgcatttgtacctattcgtcatttataagagattatatttaactcagtcacaatgcttt 149  Q
    |||||||||||||||||||||||||  || ||||||||||||  ||| ||||| ||||||| ||||||||||||||||||||||| || ||||  |||||    
T  1659491 tagtgattgcgaatgtttgttatttctaaacacattgttaacttattcgtaccaattcgtcgtttataagagattatatttaacttagccacatggcttt 1659392  T
Q  150 atcgaataa 158  Q
    |||||||||    
T  1659391 atcgaataa 1659383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 32225771 - 32225663
Alignment:
Q  50 tagtgattgcgaatgtttgttatttaaaagcacattgttaacgcatttgtacctattcgtcatttataagagattatatttaactcagtcacaatgcttt 149  Q
    ||||||||| |||||||||||||||  || ||||||||||||  ||| ||||| ||||| | ||||||||||||||||||||||||| |||||| |||||    
T  32225771 tagtgattgtgaatgtttgttatttctaaacacattgttaacttattcgtaccaattcgacgtttataagagattatatttaactcactcacaaggcttt 32225672  T
Q  150 atcgaataa 158  Q
    |||||||||    
T  32225671 atcgaataa 32225663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 7007843 - 7007943
Alignment:
Q  165 tacgtgtttggttacacgttcaaaaagagaaaacgtgcttctatctgtttaaaagcactttcaggaagtttgactctccatcacctttctgccgccgcct 264  Q
    |||||||||||||||||| |||||||  ||||||||||||| ||||||| ||||||||||| |||| ||||| || ||||| | | ||||||||||||||    
T  7007843 tacgtgtttggttacacggtcaaaaacggaaaacgtgcttccatctgttcaaaagcactttgaggatgtttggctttccataatccttctgccgccgcct 7007942  T
Q  265 t 265  Q
    |    
T  7007943 t 7007943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 165 - 264
Target Start/End: Original strand, 19643791 - 19643890
Alignment:
Q  165 tacgtgtttggttacacgttcaaaaagagaaaacgtgcttctatctgtttaaaagcactttcaggaagtttgactctccatcacctttctgccgccgcct 264  Q
    |||||||||||||||||| |||||||  ||||||| ||||| ||||||| ||||||||||| |||| ||||| |||||||| | | ||||||||||||||    
T  19643791 tacgtgtttggttacacggtcaaaaacggaaaacgcgcttccatctgttcaaaagcactttgaggatgtttggctctccataatccttctgccgccgcct 19643890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44579744 - 44579781
Alignment:
Q  1 tataaattatagatagataatattgcatatatctactt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44579744 tataaattatagatagataatattgcatatatctactt 44579781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7853644 - 7853681
Alignment:
Q  1 tataaattatagatagataatattgcatatatctactt 38  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  7853644 tatatattatagatagataatattgcatatacctactt 7853681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 4341627 - 4341727
Alignment:
Q  165 tacgtgtttggttacacgttcaaaaagagaaaacgtgcttctatctgtttaaaagcactttcaggaagtttgactctccatcacctttctgccgccgcct 264  Q
    |||||||||||||||||| |  |||| |||||| | ||||| ||||| | ||||||||||| |||| ||||| |||||||| ||| | ||| ||||||||    
T  4341627 tacgtgtttggttacacggttgaaaacagaaaatgcgcttccatctgctcaaaagcactttgaggatgtttggctctccataaccctcctgtcgccgcct 4341726  T
Q  265 t 265  Q
    |    
T  4341727 t 4341727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University