View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_37 (Length: 262)
Name: NF1159_low_37
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_37 |
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| [»] scaffold2079 (1 HSPs) |
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| [»] scaffold1112 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 197
Target Start/End: Complemental strand, 611 - 443
Alignment:
| Q |
29 |
agaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttacactatactcgattgaact |
128 |
Q |
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| T |
611 |
agaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaattcgttttatactatactcgattgaact |
512 |
T |
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| Q |
129 |
ttcttgtccaacgaacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttcattttt |
197 |
Q |
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| T |
511 |
ttcttgtccaacgagcaaaaacaattgaacctgtcccaccaaatagattccatttattccttcattttt |
443 |
T |
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Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 46 - 197
Target Start/End: Complemental strand, 6242411 - 6242256
Alignment:
| Q |
46 |
ggagctatgaaacaatttgcatgagacagtgaccca-taaaaacgtttaatacgaattcgttttacactata---ctcgattgaactttcttgtccaacg |
141 |
Q |
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| T |
6242411 |
ggagctatgaaacaatttggatgagacagtgacccattaaaaacgtttaatacgaattcgttttatactatagttctcgattgaaatttcttgtccaacg |
6242312 |
T |
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| Q |
142 |
aacnnnnnnnnttgaacctgtcccaccaaatagattccatttattccttcattttt |
197 |
Q |
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| T |
6242311 |
agcaaagaaaattgaacctgtcccaccaaatagattccatttattccttcattttt |
6242256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 6333889 - 6333961
Alignment:
| Q |
29 |
agaaaaaacatggaaaaggagctatgaaacaatttgcatgagacagtgacccataaaaacgtttaatacgaat |
101 |
Q |
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| T |
6333889 |
agaaaaaacagggaaaaagaggtatgacacaatttggatgagaaagtgacccatttaaacgtttaatacgaat |
6333961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 6330641 - 6330676
Alignment:
| Q |
73 |
agtgacccataaaaacgtttaatacgaattcgtttta |
109 |
Q |
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| T |
6330641 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6330676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 6347119 - 6347154
Alignment:
| Q |
73 |
agtgacccataaaaacgtttaatacgaattcgtttta |
109 |
Q |
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| T |
6347119 |
agtgacccataaaa-cgtttaatacgaattcgtttta |
6347154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1112 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1112
Description:
Target: scaffold1112; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 161 - 121
Alignment:
| Q |
73 |
agtgacccataaaaacgtttaatacgaattcgttttacacta |
114 |
Q |
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|||||||||||||| |||||||||||||||||||||| |||| |
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| T |
161 |
agtgacccataaaa-cgtttaatacgaattcgttttatacta |
121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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