View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1159_low_4 (Length: 569)
Name: NF1159_low_4
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 30 - 555
Target Start/End: Complemental strand, 24402301 - 24401776
Alignment:
| Q |
30 |
gactgtatatctgtcgacaagagcgtgtgaatgaagcaaatgtattagaaaaagttaatatcagaaaacaacaatgacggcagaattgtttcgtcaattt |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24402301 |
gactgtatatctgtcgacaagagcgtgtgaatgaagcaaatgtattagaaaaagttaatatcagaaaacaacaatgacggtagaattgtttcgtcaattt |
24402202 |
T |
|
| Q |
130 |
gacacgagtagtacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtca |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402201 |
gacacgagtagtacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtca |
24402102 |
T |
|
| Q |
230 |
agagatttcctggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402101 |
agagatttcctggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctt |
24402002 |
T |
|
| Q |
330 |
tttcatggattgattctccgctggaggagactcgagagtgtcctttgctcaacaaaatttaataatttgtttcatatataattttttatatcaatcatca |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24402001 |
tttcatggattgattctccgctggaggagactcgagagtgtcctttgctcaacaaaatttaataatttgtttcagatataattttttatatcaatcatca |
24401902 |
T |
|
| Q |
430 |
tttacttatccaatttgaatatgaaatgtttaaggtacctgtatctcaagaaagagcatcgagtatggataggaaaaactaatgtcaccaattgcctgga |
529 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24401901 |
tttacttatccaatttgaatattaaatgtttaaggtacctgtatctcaagaaagagcatcgagtatggataggaaaaactaatgtcaccaattgcctgga |
24401802 |
T |
|
| Q |
530 |
agattgaccagattttgtcagcaaca |
555 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
24401801 |
agattgaccagattttgtcagcaaca |
24401776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 135 - 555
Target Start/End: Complemental strand, 24379392 - 24378982
Alignment:
| Q |
135 |
gagtagtacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagaga |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
24379392 |
gagtagtacctgatatcctccaaccaaatgaatgataatgcaaacattggcaaggtcaataagccagtaaggctcataaaacccaaaccctgtcaagaga |
24379293 |
T |
|
| Q |
235 |
tttcctggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttca |
334 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||| || || |||||||||||||| |
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| T |
24379292 |
tttcctggtgtagcatttccaaaagctgcatatccaaagcctccacaacatatgtagaagaatgttgtaatggagattgccatcatggaggcctttttca |
24379193 |
T |
|
| Q |
335 |
tggattgattctccgctggaggagactcgagagtgtcctttgctcaacaaaatttaataatttgtttcatatataattttttatatcaatcatcatttac |
434 |
Q |
| |
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||| ||||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||| ||| |||||| | |
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| T |
24379192 |
tggtttgattctctggtggaggagactctagagtgtcctttgctcaacaaaattcaataatttgtttcagatgtaattcttt----------tcatttgc |
24379103 |
T |
|
| Q |
435 |
ttatccaatttgaatatgaaatgtttaaggtacctgtatctcaagaaagagcatcgagtatggataggaaaaactaatgtcaccaattgcctggaagatt |
534 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24379102 |
ttataaaatttgaatatgaaatgtttaaggtacctgtatctcaagaaagatcattgagtacggataggaaaaactaatgtcaccaattgcctggaagatt |
24379003 |
T |
|
| Q |
535 |
gaccagattttgtcagcaaca |
555 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
24379002 |
aaccagattttgtcagcaaca |
24378982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 135 - 554
Target Start/End: Complemental strand, 24414449 - 24414038
Alignment:
| Q |
135 |
gagtagtacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagaga |
234 |
Q |
| |
|
||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||| |
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|
| T |
24414449 |
gagtagtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagaga |
24414350 |
T |
|
| Q |
235 |
tttcctggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttca |
334 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||| || |||| |||||||||||||||||||| |||| |||| ||| |||||||||| |
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| T |
24414349 |
tttcctggtgtagcatctccaaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttca |
24414250 |
T |
|
| Q |
335 |
tggattgattctccgctggaggagactcgagagtgtcctttgctcaacaaaatttaataatt--tgtttc--atatataattttttatatcaatcatcat |
430 |
Q |
| |
|
| | ||||||||| | |||||||||||| || ||||||| | ||||||| |||| |||| || |||||| ||||| |||||||| | |
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|
| T |
24414249 |
ttgtttgattctctggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaatttttt------------ct |
24414162 |
T |
|
| Q |
431 |
ttacttatccaatttgaatatgaaatgtttaaggtacctgtatctcaagaaagagcatcgagtatggataggaaaaactaatgtcaccaattgcctggaa |
530 |
Q |
| |
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||| | || | |||||||||||||||||||| ||||||||||||||||||| || || || |||||||||||||||||||||||||||| ||||||||| |
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| T |
24414161 |
ttaatcattctatttgaatatgaaatgtttatggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaagtgcctggaa |
24414062 |
T |
|
| Q |
531 |
gattgaccagattttgtcagcaac |
554 |
Q |
| |
|
|||| ||||||||||||||||||| |
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|
| T |
24414061 |
gattaaccagattttgtcagcaac |
24414038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 137 - 554
Target Start/End: Original strand, 24419514 - 24419923
Alignment:
| Q |
137 |
gtagtacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatt |
236 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||| |||| |||||||||||||||||||| |
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|
| T |
24419514 |
gtagtacctgatagcctccaaccaaatgaatgataatacaaacattggcaatgtcaataagccaataaggctcaaaaaatccaaaccctgtcaagagatt |
24419613 |
T |
|
| Q |
237 |
tcctggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatg |
336 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||| || |||| |||||||||||||||||||| |||| |||| ||| ||||||||||| |
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|
| T |
24419614 |
tcctggtgtagcatctccaaaagctgcatatccaaagcatccacagcataggtagaagaatgttgtaatgaagattgcaaccatggaagcctttttcatt |
24419713 |
T |
|
| Q |
337 |
gattgattctccgctggaggagactcgagagtgtcctttgctcaacaaaatttaataatt--tgtttc--atatataattttttatatcaatcatcattt |
432 |
Q |
| |
|
| ||||||||| | |||||||||||| || ||||||| | ||||||| |||| |||| || |||||| ||||| |||||||| ||| |
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|
| T |
24419714 |
gtttgattctctggtggaggagactctagtgtgtcctgttctcaacataattcaatactttctgtttcagatatacaatttttt------------cttt |
24419801 |
T |
|
| Q |
433 |
acttatccaatttgaatatgaaatgtttaaggtacctgtatctcaagaaagagcatcgagtatggataggaaaaactaatgtcaccaattgcctggaaga |
532 |
Q |
| |
|
| | || | |||||||||||||||||||| ||||||||||||||||||| || || || |||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24419802 |
aatcattctatttgaatatgaaatgtttatggtacctgtatctcaagaaggataattgaatatggataggaaaaactaatgtcaccaagtgcctggaaga |
24419901 |
T |
|
| Q |
533 |
ttgaccagattttgtcagcaac |
554 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
24419902 |
ttaaccagattttgtcagcaac |
24419923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 141 - 381
Target Start/End: Complemental strand, 42362601 - 42362361
Alignment:
| Q |
141 |
tacctgataacctccaaccaaatgaaccataatgcaaacattggcaatgtcaacaagccagtaaggctcataaaaaccaaaccctgtcaagagatttcct |
240 |
Q |
| |
|
||||||||| ||||| |||||||||| | ||||||| |||| |||| ||||| ||||| || || |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
42362601 |
tacctgatatcctcccaccaaatgaagaacaatgcaagcattagcaaagtcaatgagccaatatggttcataaaatccaaaacctgtcaagaggtttcct |
42362502 |
T |
|
| Q |
241 |
ggtgtagcatctccaaaagatgcatatccaaagcctccgcaacatatgtagaagaatgttgtaatgagaattgacaccagggaggcctttttcatggatt |
340 |
Q |
| |
|
|| || || |||||||| ||||||||| |||| | | ||||||| |||||||||||||||||| | |||| | || ||||||||||||||||| | |
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|
| T |
42362501 |
ggagtttgatttccaaaagctgcatatccgaagcatgcacaacataggtagaagaatgttgtaatcaagattgcaatcatggaggcctttttcatggtct |
42362402 |
T |
|
| Q |
341 |
gattctccgctggaggagactcgagagtgtcctttgctcaa |
381 |
Q |
| |
|
|| || |||||||||||||| ||||||||||||| |||| |
|
|
| T |
42362401 |
tgttttctgctggaggagactctagagtgtcctttgttcaa |
42362361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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