View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_40 (Length: 252)
Name: NF1159_low_40
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 26846420 - 26846665
Alignment:
| Q |
1 |
cgatttaaaacttgtttatcaataaaataggatgaagatcatagcctatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagaccga |
100 |
Q |
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| T |
26846420 |
cgatttaaaacttgtttatcaataaaataggatgaagatcatagcttatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagactga |
26846519 |
T |
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| Q |
101 |
gcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatcc |
200 |
Q |
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| T |
26846520 |
gcaatataggaaataacatttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatcc |
26846619 |
T |
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| Q |
201 |
atgaaatcaacaaacttaccaagcaacacagcaggtttcatctcac |
246 |
Q |
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| T |
26846620 |
atgaaatcaacaaacttaccaagcaacacaacaggtttcttctcac |
26846665 |
T |
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Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 203
Target Start/End: Original strand, 54881118 - 54881202
Alignment:
| Q |
119 |
tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
203 |
Q |
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| T |
54881118 |
tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
54881202 |
T |
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