View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_41 (Length: 252)
Name: NF1159_low_41
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_41 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 252
Target Start/End: Complemental strand, 13144348 - 13144111
Alignment:
| Q |
14 |
agaacaagaccaaaaataataaaatatcgttattcaataataaccaaacttacaataattagtatttttcactataattattcgattcaagaatgaataa |
113 |
Q |
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| T |
13144348 |
agaacaagaccaaaaatgataaaatatcgttattcaataataaccaaacttacaataattagtatttttcactataattattcgattcaagaatgaataa |
13144249 |
T |
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| Q |
114 |
agaacaaatcaaaataatgaaaacaatgtacgaagttaaataaccaaacttacacaaatttaacatgcatgagatacgcaccatagggcactagtgaacc |
213 |
Q |
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| T |
13144248 |
agaacaaatcaaa-taatgaaaacaatgtacgaagttaaattaccaaacttacacaaatttaacatgcatgagatacgcaccatagggcattggtgaacc |
13144150 |
T |
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| Q |
214 |
aaacaacaattgatcctgtgagtaattatgggccctcca |
252 |
Q |
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| T |
13144149 |
aaacaacaattgatcctgtgagtaattacgggccctcca |
13144111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 120
Target Start/End: Complemental strand, 13144757 - 13144719
Alignment:
| Q |
82 |
tcactataattattcgattcaagaatgaataaagaacaa |
120 |
Q |
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| T |
13144757 |
tcactgtaataattcgattcaagaatgaataaagaacaa |
13144719 |
T |
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