View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1159_low_42 (Length: 251)

Name: NF1159_low_42
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1159_low_42
NF1159_low_42
[»] chr2 (5 HSPs)
chr2 (5-224)||(7384769-7384988)
chr2 (42-240)||(7395691-7395889)
chr2 (96-240)||(11312052-11312206)
chr2 (1-47)||(7394701-7394747)
chr2 (44-149)||(19084540-19084646)
[»] chr4 (3 HSPs)
chr4 (19-240)||(28874100-28874321)
chr4 (159-224)||(14000019-14000084)
chr4 (30-67)||(20355054-20355091)
[»] chr8 (6 HSPs)
chr8 (60-240)||(10733940-10734119)
chr8 (110-240)||(10738972-10739102)
chr8 (181-240)||(17909750-17909809)
chr8 (74-159)||(17702998-17703083)
chr8 (159-224)||(30735285-30735350)
chr8 (1-69)||(29185499-29185567)
[»] chr1 (8 HSPs)
chr1 (60-240)||(26023376-26023566)
chr1 (157-240)||(26028693-26028776)
chr1 (1-88)||(27417368-27417455)
chr1 (1-90)||(36686776-36686865)
chr1 (1-104)||(11443994-11444098)
chr1 (179-240)||(18188307-18188364)
chr1 (1-81)||(145338-145417)
chr1 (44-81)||(27317733-27317770)
[»] chr5 (9 HSPs)
chr5 (43-240)||(28663633-28663841)
chr5 (73-240)||(19699347-19699528)
chr5 (10-240)||(17935464-17935705)
chr5 (1-90)||(40786733-40786823)
chr5 (1-90)||(24228245-24228335)
chr5 (1-104)||(24213251-24213356)
chr5 (204-240)||(17945752-17945788)
chr5 (1-81)||(29742097-29742176)
chr5 (43-105)||(35105136-35105198)
[»] chr3 (4 HSPs)
chr3 (1-212)||(38419796-38420010)
chr3 (96-227)||(7117154-7117295)
chr3 (5-54)||(13639769-13639818)
chr3 (30-105)||(20463118-20463194)
[»] scaffold0248 (1 HSPs)
scaffold0248 (96-240)||(16080-16234)
[»] chr6 (6 HSPs)
chr6 (96-240)||(23600012-23600169)
chr6 (43-227)||(17190645-17190840)
chr6 (44-161)||(17275100-17275218)
chr6 (44-161)||(17270165-17270289)
chr6 (75-161)||(11302235-11302321)
chr6 (204-240)||(11302144-11302180)
[»] scaffold0066 (1 HSPs)
scaffold0066 (1-58)||(11759-11816)


Alignment Details
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 7384769 - 7384988
Alignment:
Q  5 tatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtctttacatgataatataagttttatttatag 104  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||| || ||  |||||||||    
T  7384769 tatataagaatagagagaaagaaataaagagagaatataagagtatattgtattgcttctcaagtatgtctttatatggtaatgtaggtcctatttatag 7384868  T
Q  105 aatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataaagtcatttagtcatattagttaaggaatatagaaggtctaggg 204  Q
    |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7384869 aatacaaaagttgtaactttcaattacatgaagagccatgagactaaatatcaataaagtcatttagtcatattagttaagaaatatagaaggtctaggg 7384968  T
Q  205 acaatggacatccacatcat 224  Q
    ||||||||||||||||||||    
T  7384969 acaatggacatccacatcat 7384988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 7395691 - 7395889
Alignment:
Q  42 taagagtatattgtattgcttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagcc 141  Q
    ||||||| |||||||||||||||||| ||||||||||||||| ||| || ||  ||||||||| ||| ||||||||   |||| |||||||||||||||     
T  7395691 taagagtgtattgtattgcttctcaattatgtctttacatgacaatgtaggtcctatttataggatacaaaagttgcgtcttctaattacatgaagagct 7395790  T
Q  142 atgagactaaatatcaataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7395791 atgagactaaatatcaataaagtcatttaatcatagtagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 7395889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 11312206 - 11312052
Alignment:
Q  96 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaata----------aagtcatttagtcatattagttaag 185  Q
    ||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||||||| ||||||          |||| ||| ||||||| ||||||||    
T  11312206 tatttataggatacaaaagttgtaccttacaattacatgaagagccatgagactaaatgtcaataggaataaataaagttattaagtcatagtagttaag 11312107  T
Q  186 gaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    | ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11312106 ggatatagaaggtctagggacaatgtacatccacatcatattttcatttattcat 11312052  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7394701 - 7394747
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagag 47  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||    
T  7394701 aaagtatataaaaatagagagaaagaaacaaagagagaacataagag 7394747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 19084646 - 19084540
Alignment:
Q  44 agagtatattgtattgcttctcaagtatg-tctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagcca 142  Q
    |||||||| ||||||||||||||||| || |||||||| |  |||||||||  ||||||||  | | ||| || |||| || ||| ||||||||||||||    
T  19084646 agagtatagtgtattgcttctcaagtgtgttctttacaagcaaatataagtcctatttatatgacacaaatgtggtaagttacaagtacatgaagagcca 19084547  T
Q  143 tgagact 149  Q
    | |||||    
T  19084546 taagact 19084540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 28874321 - 28874100
Alignment:
Q  19 gagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgt 118  Q
    |||||||||||||||||| || |||| | | | ||||||| |||| ||||| |||||||| |||| | | || ||  ||||||||| ||| |||||||||    
T  28874321 gagaaagaaacaaagagagaacataaaaatgttttgtattacttcacaagtgtgtctttatatgacagtgtaggtcctatttataggatacaaaagttgt 28874222  T
Q  119 aacttccaattacatgaagagccatgagactaaatatcaataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatcca 218  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||    
T  28874221 aacttacaattacatgaagaaccatgagactaaatatcaataaagtcatttagtcataatagttaagaaatatagaaggtctagggataatggacatcca 28874122  T
Q  219 catcatattttcatttattcat 240  Q
    ||||||||||||||||||||||    
T  28874121 catcatattttcatttattcat 28874100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Complemental strand, 14000084 - 14000019
Alignment:
Q  159 taaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcat 224  Q
    ||||| |||||| |||||| ||||| || |||||||| |  |||| ||||||||||||||||||||    
T  14000084 taaagccatttactcatataagttagggcatatagaaagcttaggaacaatggacatccacatcat 14000019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 20355054 - 20355091
Alignment:
Q  30 aaagagaaaatataagagtatattgtattgcttctcaa 67  Q
    ||||||| |||| |||||||||||||||||||||||||    
T  20355054 aaagagagaataaaagagtatattgtattgcttctcaa 20355091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 10734119 - 10733940
Alignment:
Q  60 cttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaat 159  Q
    |||| ||||||| ||||||||||| ||| || ||  ||||||||| ||| ||| |||||||||| ||||||||||||||| ||||||| |||||||||||    
T  10734119 cttcacaagtatatctttacatgacaatgtaggtcctatttataggatacaaa-gttgtaacttacaattacatgaagagtcatgagattaaatatcaat 10734021  T
Q  160 aaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10734020 aaagtcatttagtcatagtagttaaagaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 10733940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 110 - 240
Target Start/End: Complemental strand, 10739102 - 10738972
Alignment:
Q  110 aaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaat 209  Q
    |||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  10739102 aaaagttgtaacttacatttacatgaagagtcatgagactaaatatcaataaagtcatttagtcatagtagttaaagaatatagaaggtctagggacaat 10739003  T
Q  210 ggacatccacatcatattttcatttattcat 240  Q
    |||||||||||| ||||||||||||||||||    
T  10739002 ggacatccacataatattttcatttattcat 10738972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 17909809 - 17909750
Alignment:
Q  181 ttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17909809 ttaaggaaaatagaagggctagggacaatggacatccacatcatattttcatttattcat 17909750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 17703083 - 17702998
Alignment:
Q  74 ctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaat 159  Q
    |||||||||| ||| || ||  ||||||||| ||| ||||||| |||||| ||| |||    ||||||||||||||||||||||||    
T  17703083 ctttacatgacaatgtatgtcctatttataggatacaaaagttttaacttacaagtaccctcagagccatgagactaaatatcaat 17702998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 224
Target Start/End: Original strand, 30735285 - 30735350
Alignment:
Q  159 taaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcat 224  Q
    ||||| |||||| |||||  ||||| ||||||||||| |  |||| ||||||||||||||||||||    
T  30735285 taaagccatttactcataggagttagggaatatagaaagcttaggaacaatggacatccacatcat 30735350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 29185499 - 29185567
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagt 69  Q
    |||||||||||||||||||| |||| || ||||| | || || ||||||||||| ||| |||| |||||    
T  29185499 aaagtatataagaatagagaaaaaggaataaagaaagaacatgagagtatattgcattacttcacaagt 29185567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 60 - 240
Target Start/End: Complemental strand, 26023566 - 26023376
Alignment:
Q  60 cttctcaagtatgtctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaat 159  Q
    ||||||| |||||||||||||||| ||| || ||| ||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  26023566 cttctcatgtatgtctttacatgacaatgtaggttctatttataggatacaaaagttgtaacttacaattatatgaagagccatgagactaaatatcaat 26023467  T
Q  160 a----------aagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    |          |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26023466 aggaataaataaagtcatttagtcatagtagttaaggaatatagaaggtctagagacaatggacatccacatcatattttcatttattcat 26023376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 26028776 - 26028693
Alignment:
Q  157 aataaagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26028776 aataaagtcatttagtcataatagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 26028693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 27417368 - 27417455
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtctttacatgataata 88  Q
    ||||||||||||||||||||||||| || ||||||| || || |||||||| |||||| |||||||||| ||||||||||| ||||||    
T  27417368 aaagtatataagaatagagagaaaggaataaagagataagatgagagtatactgtattccttctcaagtgtgtctttacattataata 27417455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 36686865 - 36686776
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtctttacatgataatata 90  Q
    ||||||||||| ||||||||||||| || ||| ||| ||||  |||||||| ||||||||||||||||  ||||||||||| | ||||||    
T  36686865 aaagtatataaaaatagagagaaaggaataaaaagagaataagagagtatagtgtattgcttctcaagagtgtctttacattacaatata 36686776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 11443994 - 11444098
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgt-ctttacatgataatataagttttatt 99  Q
    ||||||||||| ||||||||||| |||||||||  | || |||||||||||||||||| |||| ||||| |||  || |||| |||||||||||  ||||    
T  11443994 aaagtatataataatagagagaatgaaacaaaggaagaacataagagtatattgtattacttcacaagtgtgtaattcacattataatataagtcctatt 11444093  T
Q  100 tatag 104  Q
    |||||    
T  11444094 tatag 11444098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 18188307 - 18188364
Alignment:
Q  179 agttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    ||||||||||||||||||||||||||||||||    ||| ||||||||||||||||||||||    
T  18188307 agttaaggaatatagaaggtctagggacaatg----tccccatcatattttcatttattcat 18188364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 145338 - 145417
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtctttacat 81  Q
    |||||||||| |||||||||||||| |  ||||||| || |  |||||||| ||||||||||||||||| |||| ||||||    
T  145338 aaagtatatatgaatagagagaaaggat-aaagagagaacaagagagtatagtgtattgcttctcaagtgtgtcattacat 145417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 27317770 - 27317733
Alignment:
Q  44 agagtatattgtattgcttctcaagtatgtctttacat 81  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  27317770 agagtatattgtattacttctcaagtgtgtctttacat 27317733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 43 - 240
Target Start/End: Original strand, 28663633 - 28663841
Alignment:
Q  43 aagagtatattgtattgcttctcaagtatgt-ctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagcc 141  Q
    |||| |||||||||||| ||||||||| ||| |||||||||| ||| ||  |  ||||||||| ||| ||||||||||||||  ||||||||||||||||    
T  28663633 aagaatatattgtattgtttctcaagtgtgttctttacatgacaatgtagatcctatttataggatacaaaagttgtaacttataattacatgaagagcc 28663732  T
Q  142 atgagactaaatatcaata----------aagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttca 231  Q
    |||||||||||||||||||          |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  28663733 atgagactaaatatcaataggaataaataaagtcatttagtcacaatagttaaggaatatagaaggtctggggacaatggacatccaaatcatattttca 28663832  T
Q  232 tttattcat 240  Q
    |||||||||    
T  28663833 tttattcat 28663841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 19699528 - 19699347
Alignment:
Q  73 tctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagag----ccatgagactaaatatcaata-------- 160  Q
    ||||||||||| ||| || ||  ||||||||| ||| |||||||||||||| || ||||||||||||    |||||||||||||||||||||            
T  19699528 tctttacatgacaatgtatgtcatatttataggatacaaaagttgtaacttacagttacatgaagagtcagccatgagactaaatatcaataggaataaa 19699429  T
Q  161 --aagtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
      ||| |||||| ||||| ||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||    
T  19699428 taaaggcatttaatcatagtagttaagggatatataaggtctagggacaatggtcatccacatcatatttgcatttattcat 19699347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 17935705 - 17935464
Alignment:
Q  10 aagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtcttt-acatgataatataagttttatttatagaata 108  Q
    |||| |||||||||||  | ||||||| || | |||||||| |||||||||||||||||| ||||||| ||||    ||||||||  ||||||||||| |    
T  17935705 aagagtagagagaaagggataaagagataacaaaagagtatgttgtattgcttctcaagtgtgtcttttacattgagatataagtcctatttatagaaca 17935606  T
Q  109 taaaagttgtaacttccaattacatgaagagccatgagactaaat----------atcaataaagtcatttagtcatattagttaaggaatatagaaggt 198  Q
     | | ||  ||| || ||| ||||||||||||||| ||||||| |          ||||||| |  |||| | || ||  ||||||||||||||||||||    
T  17935605 cacatgtgataagttacaagtacatgaagagccataagactaagtgtcattaactatcaatatatgcattcactcttaggagttaaggaatatagaaggt 17935506  T
Q  199 ctagggacaatggacatccacatcatattttcatttattcat 240  Q
    ||||  ||||||||||||| ||||||||||||||||||||||    
T  17935505 ctagaaacaatggacatccgcatcatattttcatttattcat 17935464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 40786823 - 40786733
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatg-tctttacatgataatata 90  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| ||||||||| |||| ||||| || ||||||||| | ||||||    
T  40786823 aaagtatataagaatagagagaaagaaacaaagagagaacataagagtgtattgtattacttcacaagtgtgttctttacattacaatata 40786733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 24228245 - 24228335
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgt-ctttacatgataatata 90  Q
    |||||||||||||||||||||||||||||||||||| |  |||| | | ||||||||| |||| ||||| ||| |||||||| | ||||||    
T  24228245 aaagtatataagaatagagagaaagaaacaaagagagagcataataatgtattgtattacttcacaagtgtgtactttacattacaatata 24228335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 24213251 - 24213356
Alignment:
Q  1 aaagtatataagaatagagagaaag-aaacaaagagaaaatataagagtatattgtattgcttctcaagtatgt-ctttacatgataatataagttttat 98  Q
    ||||||||||| | ||||||||||| ||| ||||| | || |||||||| ||||||||| |||| ||||||||| |||||||| | |||||| ||  |||    
T  24213251 aaagtatataacattagagagaaagaaaaaaaagaaagaacataagagtgtattgtattacttcacaagtatgtactttacattacaatataggtcctat 24213350  T
Q  99 ttatag 104  Q
    ||||||    
T  24213351 ttatag 24213356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 17945788 - 17945752
Alignment:
Q  204 gacaatggacatccacatcatattttcatttattcat 240  Q
    ||||||||||||||||||||||||||| |||||||||    
T  17945788 gacaatggacatccacatcatattttcctttattcat 17945752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 29742097 - 29742176
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtctttacat 81  Q
    |||||||||||||||||||||||||  | |||| || || | |||||||||||||||| |||| ||||| |||| ||||||    
T  29742097 aaagtatataagaatagagagaaag-gataaagggagaacaaaagagtatattgtattacttcacaagtgtgtcattacat 29742176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 35105198 - 35105136
Alignment:
Q  43 aagagtatattgtattgcttctcaagtatgtctttacatgataatataagttttatttataga 105  Q
    |||||||| ||||||| |||||||||||||||||||||  | ||||| |||  ||||||||||    
T  35105198 aagagtatgttgtattacttctcaagtatgtctttacactaaaatatgagtcctatttataga 35105136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 38420010 - 38419796
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtattgcttctcaagtatgtctttacatgataatataagttttattt 100  Q
    ||||||| |||||||||||||||||||||||| ||| || |||||||| | ||||||| |||| ||| | ||||||||||||| ||| ||| |  |||||    
T  38420010 aaagtatgtaagaatagagagaaagaaacaaatagagaacataagagtgttttgtattacttcacaaatgtgtctttacatgacaatgtaactcctattt 38419911  T
Q  101 atagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataaagtcatttagtcatattag---ttaaggaatatagaagg 197  Q
    |||  ||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||   |||| |||||||||||     
T  38419910 atacgatacaaaagttgtaacttacaattacatgaagaaccatgagactaaatatcaataaattcatttaatcatactagtaattaaagaatatagaaga 38419811  T
Q  198 tctagggacaatgga 212  Q
    |||||| ||||||||    
T  38419810 tctaggaacaatgga 38419796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 227
Target Start/End: Original strand, 7117154 - 7117295
Alignment:
Q  96 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataa----------agtcatttagtcatattagttaag 185  Q
    ||||||||| ||| |||||||||||||| ||| ||||||||||  |||||||||||||||||||||          || ||||||||||||  | |||||    
T  7117154 tatttataggatacaaaagttgtaacttacaagtacatgaagaatcatgagactaaatatcaataagaatgaataaagacatttagtcatagaaattaag 7117253  T
Q  186 gaatatagaaggtctagggacaatggacatccacatcatatt 227  Q
    | ||||| |||||||||||| |||||||||||||||||||||    
T  7117254 ggatataaaaggtctagggaaaatggacatccacatcatatt 7117295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 13639818 - 13639769
Alignment:
Q  5 tatataagaatagagagaaagaaacaaagagaaaatataagagtatattg 54  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  13639818 tatataagaatagagagaaagaaccaaagagagaatataagagtgtattg 13639769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 105
Target Start/End: Original strand, 20463118 - 20463194
Alignment:
Q  30 aaagagaaaatataagagtatattgtattgcttctcaagtatg-tctttacatgataatataagttttatttataga 105  Q
    ||||||| || | ||||||||  ||||||||||||||||| || ||||||||| | |||||| ||| ||||||||||    
T  20463118 aaagagataacaaaagagtatgatgtattgcttctcaagtgtgttctttacattacaatataggttctatttataga 20463194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 96 - 240
Target Start/End: Complemental strand, 16234 - 16080
Alignment:
Q  96 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaata----------aagtcatttagtcatattagttaag 185  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||          |||||||||||||||| |||||||     
T  16234 tatttataggatacaaaagttgtaacttacaattacatgaagagccatgagagtaaatatcaatatgaataaataaagtcatttagtcatagtagttaaa 16135  T
Q  186 gaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    ||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||    
T  16134 gaatatagaaggtatagagacaatgtacatccacatcatattttcatttattcat 16080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 240
Target Start/End: Original strand, 23600012 - 23600169
Alignment:
Q  96 tatttatagaatataaaagttgtaacttccaattacatgaagagccatgaga---ctaaatatcaata----------aagtcatttagtcatattagtt 182  Q
    ||||||||| |||||||||||||||||| ||||||||||||||| |||||||   |||||||||||||          |||||||||||||||| |||||    
T  23600012 tatttataggatataaaagttgtaacttacaattacatgaagagtcatgagagtactaaatatcaataggaataaacaaagtcatttagtcatagtagtt 23600111  T
Q  183 aaggaatatagaaggtctagggacaatggacatccacatcatattttcatttattcat 240  Q
    |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  23600112 aagggatatagaaggtttagggacaatggacatctacatcatattttcatttattcat 23600169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 17190840 - 17190645
Alignment:
Q  43 aagagtatattgtattgcttctcaagtatgtc-tttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagcc 141  Q
    |||||||||||||||| |||||||||| || | ||||||||  ||| ||  |  ||||||||| ||  |||||||||||||| ||| || |||||||| |    
T  17190840 aagagtatattgtatttcttctcaagtgtgccctttacatggcaatgtagatcctatttataggatgcaaaagttgtaacttacaagtatatgaagagtc 17190741  T
Q  142 atgagactaaatatcaataa----------agtcatttagtcatattagttaaggaatatagaaggtctagggacaatggacatccacatcatatt 227  Q
    ||| || |||||||||||||          ||||||||||||||| ||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  17190740 atgggattaaatatcaataagaatgaataaagtcatttagtcatagtagttaagggatatagaaagtctagggaaaatggacatccacatcatatt 17190645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 17275100 - 17275218
Alignment:
Q  44 agagtatattgtattgcttctcaagtatgt-ctttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagcca 142  Q
    |||| ||||||||||||||||||||| ||| |||||||||  ||| || ||  ||||||||  ||| |||||||||||||| ||||||||||||||| ||    
T  17275100 agagcatattgtattgcttctcaagtgtgttctttacatggcaatgtaggtcctatttatatgatacaaaagttgtaacttacaattacatgaagagtca 17275199  T
Q  143 tgagactaaatatcaataa 161  Q
    |||||||||||||||||||    
T  17275200 tgagactaaatatcaataa 17275218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 17270165 - 17270289
Alignment:
Q  44 agagtatattgtattgcttctcaagtatgt-ctttacatgataatataagt------tttatttatagaatataaaagttgtaacttccaattacatgaa 136  Q
    |||||||||||||||||||||||||| ||| |||||||||  ||| || ||      | ||||||||| ||| |||||||||||||| ||||||||||||    
T  17270165 agagtatattgtattgcttctcaagtgtgttctttacatggcaatgtaggtcctatatctatttataggatacaaaagttgtaacttacaattacatgaa 17270264  T
Q  137 gagccatgagactaaatatcaataa 161  Q
    ||| ||| ||||||||| |||||||    
T  17270265 gagtcataagactaaatttcaataa 17270289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 11302321 - 11302235
Alignment:
Q  75 tttacatgataatataagttttatttatagaatataaaagttgtaacttccaattacatgaagagccatgagactaaatatcaataa 161  Q
    |||||||| |||| |||||  ||||||||| ||| ||||||||||| || |||||||||||||||| |||| |  ||||||||||||    
T  11302321 tttacatggtaatgtaagtcctatttataggatacaaaagttgtaatttacaattacatgaagagctatgaaataaaatatcaataa 11302235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 11302180 - 11302144
Alignment:
Q  204 gacaatggacatccacatcatattttcatttattcat 240  Q
    ||||||| |||||||||||||||||||||||||||||    
T  11302180 gacaatgaacatccacatcatattttcatttattcat 11302144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11816 - 11759
Alignment:
Q  1 aaagtatataagaatagagagaaagaaacaaagagaaaatataagagtatattgtatt 58  Q
    |||||||||||||| | ||||||| ||| ||||||| || |||||||| |||||||||    
T  11816 aaagtatataagaacaaagagaaataaataaagagagaacataagagtgtattgtatt 11759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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