View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_6 (Length: 504)
Name: NF1159_low_6
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 115 - 454
Target Start/End: Original strand, 34224857 - 34225199
Alignment:
| Q |
115 |
aagaagatgggtttaactgaacctaaggttgttactggtcctgctggttatgtacttgaagatgttcctcacttgtctgattacattcctgatcttcctg |
214 |
Q |
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| T |
34224857 |
aagaagatgggtttaactgaacctaaggttgttactggtcctgctggttatgtacttgaagatgttcctcacttgtctgattacattcctgatcttcctg |
34224956 |
T |
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| Q |
215 |
tacg--nnnnnnnnnnnnnnnnnagcttttttctcaagctactattcatggtcaatgattaatcatgtttaac-nnnnnnnnnctgtaatgtttgtctta |
311 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34224957 |
tacgtctctctctctctctctctagcttttttctcaagctactattcatggtcaatgattaatcatgtttaacttttttttttctgtaatgtttgtctta |
34225056 |
T |
|
| Q |
312 |
ataattaaaaaatataagatacttttaatattctttttctttctgccgacagtaaattattattattaattatgttggattattggtgnnnnnnnnnnnn |
411 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34225057 |
ataattaaaaaataaaagatacttttaatattctttttctttctgccgacagtaaattattattattaattatgttggattattggtgttttttgttttt |
34225156 |
T |
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| Q |
412 |
nnatctgctaacagatcagatatgaataatttggttatgccac |
454 |
Q |
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| T |
34225157 |
ttatctgctaacagatcagatatgaataatttggttatgccac |
34225199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 43299936 - 43299889
Alignment:
| Q |
169 |
cttgaagatgttcctcacttgtctgattacattcctgatcttcctgta |
216 |
Q |
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||||| |||||||||||||||||||||||||| |||||||| |||||| |
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| T |
43299936 |
cttgaggatgttcctcacttgtctgattacatacctgatctccctgta |
43299889 |
T |
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