View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1159_low_7 (Length: 504)
Name: NF1159_low_7
Description: NF1159
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1159_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 113 - 472
Target Start/End: Complemental strand, 43773250 - 43772887
Alignment:
| Q |
113 |
agtagtgaaatttgtttattttcaatttattgagatgggaacaatatttgggtgtcattgctatctgagtgatgtatcttggggaaatatcattttatgt |
212 |
Q |
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| T |
43773250 |
agtagtgaaatttgtttattttcaatttattgagatgggaacaatatttgggtgtcattgctatctgagtgatgtatcttggggaaatatcattttatgt |
43773151 |
T |
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| Q |
213 |
tgattgtttctgtatttgtttttaatagttgtttcttattagggggctatattt----tactccttgtggtattatcaccctggggaaaacaaatagtac |
308 |
Q |
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| T |
43773150 |
tgattgtttctgtatttgtttttaatagttgtttcttattagggggctatatttcatttactccttgtggtattatcaccctggggaaaacaaatagtac |
43773051 |
T |
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| Q |
309 |
ataaaaattaactattgatcttgttttctaactgtaggttaaagaattatgtgagaaggctaaggagattttaatggatgaaagcaatgtccaggtagag |
408 |
Q |
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| T |
43773050 |
ataaaaattaactattgatcttgttttctaactgtaggttaaagaattatgtgagaaggctaaggagattttaatggatgaaagtaatgtccaggtagag |
43772951 |
T |
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| Q |
409 |
ccttttcttcctgccttatttttcaattaggccattttctgtttccggataccttcatctcact |
472 |
Q |
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| T |
43772950 |
ccttttcttcctgccttatttttcaattaggccattttctgtttccggataccttcatctcact |
43772887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 29 - 119
Target Start/End: Complemental strand, 55095311 - 55095221
Alignment:
| Q |
29 |
actaacacacacattaattagacattacataataataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaagagtagtg |
119 |
Q |
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| T |
55095311 |
actaacacacacattaattagacattacataataataaaaagagaaaggttaattacctgatagtagatgtgatcagagtcaggagtagtg |
55095221 |
T |
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