View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11600_high_3 (Length: 317)
Name: NF11600_high_3
Description: NF11600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11600_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 2332189 - 2332494
Alignment:
| Q |
1 |
gaagacgacgaaataaaatttctggtttgaatgtggaaaacatatggtgcacgaatgcaagcactctcaaaagggaagcctcaaagttttttatgaatct |
100 |
Q |
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| T |
2332189 |
gaagacggcgaaataaaatttctggtttgaatgtggaaaacat--ggtgcacgaatgcaagcactctcaaaagggaagcctcaaagttttttatgcatct |
2332286 |
T |
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| Q |
101 |
attccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttagcattaacttgatggaccagcttctcttgcctgt |
200 |
Q |
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| T |
2332287 |
atcccaatcaaatgatccctgtaaacctctcatatagtttacaactggataatattccatctcttggcattagcttgatggaccagcttctcttgcctgt |
2332386 |
T |
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| Q |
201 |
aactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcat |
300 |
Q |
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| T |
2332387 |
cactatggaaaggattaaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcat |
2332486 |
T |
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| Q |
301 |
attcttgg |
308 |
Q |
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||| |||| |
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| T |
2332487 |
attgttgg |
2332494 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 1261909 - 1261818
Alignment:
| Q |
217 |
aaagattctattttccctatgcactcttacaaagccctaggacatgatggatttcaaccgatattttacaaaatttgttggcatattcttgg |
308 |
Q |
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| T |
1261909 |
aaagatgctattttctcaatgcactcttacaaagccccgggtccagatggttttcaacctatttttttcaaaacttattggcatattgttgg |
1261818 |
T |
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