View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11600_high_4 (Length: 313)
Name: NF11600_high_4
Description: NF11600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11600_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 28783465 - 28783194
Alignment:
| Q |
1 |
acctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacca |
100 |
Q |
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| T |
28783465 |
acctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaacca |
28783366 |
T |
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| Q |
101 |
tgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaaga |
200 |
Q |
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| T |
28783365 |
tgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaaga |
28783266 |
T |
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| Q |
201 |
aaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccacaggttc |
272 |
Q |
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| T |
28783265 |
aaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttc |
28783194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 83 - 265
Target Start/End: Complemental strand, 28783278 - 28783099
Alignment:
| Q |
83 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
182 |
Q |
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| T |
28783278 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
28783179 |
T |
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| Q |
183 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
265 |
Q |
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| T |
28783178 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
28783099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 28783531 - 28783448
Alignment:
| Q |
1 |
acctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
84 |
Q |
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| T |
28783531 |
acctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgt |
28783448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 78
Target Start/End: Complemental strand, 28783624 - 28783553
Alignment:
| Q |
7 |
tcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
78 |
Q |
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| T |
28783624 |
tcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctcc |
28783553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28783498 - 28783421
Alignment:
| Q |
1 |
acctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcc |
78 |
Q |
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| T |
28783498 |
acctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctcc |
28783421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 28783578 - 28783514
Alignment:
| Q |
20 |
cctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
84 |
Q |
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| T |
28783578 |
cctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctccgcctgt |
28783514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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