View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11601_high_1 (Length: 607)
Name: NF11601_high_1
Description: NF11601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11601_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 11 - 588
Target Start/End: Complemental strand, 2442748 - 2442170
Alignment:
| Q |
11 |
cagagaatgtggatccaggggtaggaaaatgggtttcttatcttaaacgtgagaagaagctcgattcactggttggtcgccgtccaactgctcctccagc |
110 |
Q |
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| T |
2442748 |
cagagaatgtggatccaggggtaggaaaatgggtttcttatcttaaacgtgagaagaagctcgattcactggttggtcgccgtccaactgctcctccagc |
2442649 |
T |
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| Q |
111 |
tcccaaaggactttacatatatggcaatgtgggcagtggtacttaccttcttttatttgtcttttgggtaaattatcttttccattccatcctcatgatg |
210 |
Q |
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| T |
2442648 |
tcccaaaggactttacatatatggcaatgtgggcagtggtacttaccttcttttatttgtcttttgggtaaattatcttttccattccatcctcatgatg |
2442549 |
T |
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| Q |
211 |
attaaatttacattgtcctttcctctgattttaaaaatcacactcccctctcttagaagatgaatgagttactatttattccattattacgtaaacatgt |
310 |
Q |
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| T |
2442548 |
attaaatttacattgtcctttcctctgattttgaaaatcacactcccctctcttagaagatgaatgagttactatttattccattattacgtaaacatgt |
2442449 |
T |
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| Q |
311 |
tttttagggannnnnnnncctgtatgctagtatcaacattactgatatctaattttgaacctctattgtcaactgagacttaagaaaatgaaacgaaggg |
410 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2442448 |
tttttagggattttttttcctgtatgctagtatcaacattactgatatctaattttgaacctctattgtcaactgagacttaagaaaatgaaacgaaggg |
2442349 |
T |
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| Q |
411 |
ttgggtgaagtttcaaagttaataggaggagacttcatttcttcttgttaagttataaattcaacaagacattcaaaatagttgtta-nnnnnnnnnnaa |
509 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2442348 |
ttgggtgaagtttcaaagttaataggaggagacttcatttcttcttgttaagttataaattcaacaagacattcaaaatagttgttatttttttttttaa |
2442249 |
T |
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| Q |
510 |
tggcattcaaaatagttgttattgaaaattgtaaaaagaagaaaaatgtcggagggagttcatttatagttgctcacca |
588 |
Q |
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| T |
2442248 |
tggcattcaaaatagttgttattgaaaattgtaaaaagaagaaaaatgtcggagggagttcatttatagttgctcacca |
2442170 |
T |
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