View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11601_high_10 (Length: 235)

Name: NF11601_high_10
Description: NF11601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11601_high_10
NF11601_high_10
[»] chr4 (3 HSPs)
chr4 (18-153)||(34512640-34512774)
chr4 (18-153)||(28163333-28163469)
chr4 (18-153)||(44452634-44452771)
[»] chr7 (6 HSPs)
chr7 (18-153)||(8833262-8833397)
chr7 (18-153)||(8082356-8082491)
chr7 (18-153)||(38595051-38595187)
chr7 (18-153)||(37108228-37108364)
chr7 (18-153)||(1066230-1066367)
chr7 (74-153)||(40304201-40304279)
[»] chr8 (5 HSPs)
chr8 (18-144)||(44894032-44894157)
chr8 (18-153)||(32244226-32244363)
chr8 (31-153)||(3866233-3866357)
chr8 (84-149)||(6243801-6243866)
chr8 (116-153)||(44893965-44894003)
[»] chr5 (4 HSPs)
chr5 (11-153)||(37812806-37812947)
chr5 (10-153)||(19333005-19333151)
chr5 (18-153)||(40272788-40272924)
chr5 (18-149)||(43210453-43210587)
[»] chr1 (6 HSPs)
chr1 (18-149)||(52010412-52010542)
chr1 (18-153)||(11397584-11397724)
chr1 (18-153)||(25352505-25352639)
chr1 (18-153)||(52882139-52882274)
chr1 (18-153)||(49768236-49768373)
chr1 (22-148)||(27551126-27551254)
[»] chr3 (6 HSPs)
chr3 (18-153)||(31991635-31991771)
chr3 (18-153)||(44556246-44556383)
chr3 (19-153)||(33475798-33475934)
chr3 (12-153)||(52701707-52701855)
chr3 (18-153)||(8575508-8575643)
chr3 (18-127)||(41927784-41927897)
[»] chr2 (2 HSPs)
chr2 (18-153)||(32318552-32318689)
chr2 (18-125)||(3118524-3118627)
[»] chr6 (2 HSPs)
chr6 (43-153)||(289328-289439)
chr6 (18-151)||(3914031-3914165)


Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 34512774 - 34512640
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||| | |||||||||||||||||| || ||||    
T  34512774 agaagattgaagagagcgaagtaggaacaaagagaaacagcaacacaaatctggt-ttttttcggcaaatttagggaatgaccggaaatatttgtagggt 34512676  T
Q  118 gaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||||||||||||||||||||||||||||||||||    
T  34512675 gaaatattttattgatgtggaagaataaaaaggaat 34512640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 28163469 - 28163333
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtctttttt--cggcaaattcaaggaatgaccggaaatattggtggg 115  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||| || | ||||||  ||||||||||| |||||||||| ||||||| ||  |    
T  28163469 agaagattgaagagagcgaagtaggaacaaagagaaacagtaacacaaatctgatttttttttccggcaaattcagggaatgaccgaaaatatttgt-ag 28163371  T
Q  116 gtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||||||| |||||||||||||||||||    
T  28163370 gtgaaatattttattgatctggaagaataaaaaggaat 28163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 44452634 - 44452771
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcg--gcaaattcaaggaatgaccggaaatattggtggg 115  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| || |||| ||||| |   ||||||||| |||||||||| |||| || || ||    
T  44452634 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacacatatctggtttttttccccagcaaattcagggaatgaccgaaaatgtttgtagg 44452733  T
Q  116 gtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||| ||| |||||||||||||| ||||    
T  44452734 gtgaaatattttatggatctggaagaataaaaaagaat 44452771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 3e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 8833262 - 8833397
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    ||||||||||||||||| ||||||||||||||||||| | |||||||||| |||| ||||||||||||||||| ||||| ||| |||||||| || ||||    
T  8833262 agaagattgaagagagcaaagtaggaacaaagagaaatagcaacacaaatctggttttttttcggcaaattcagggaattaccagaaatatttgtagggt 8833361  T
Q  118 gaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||||||||||||||||||||||||||||||||||    
T  8833362 gaaatattttattgatgtggaagaataaaaaggaat 8833397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 8082356 - 8082491
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||||||| |||| ||||| ||||||||||| |||||||||| || |||| || ||||    
T  8082356 agaagattgaatagagagaagtaggaacaaagagaaacagcaacacaaatctggt-tttttccggcaaattcagggaatgaccgaaagtatttgtagggt 8082454  T
Q  118 gaaatattttattgatgtggaagaata-aaaaggaat 153  Q
    ||||||||||||||||||||||||||| |||||||||    
T  8082455 gaaatattttattgatgtggaagaatacaaaaggaat 8082491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 38595051 - 38595187
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtgg-tcttttttcggcaaattcaaggaatgaccggaaatattggtgggg 116  Q
    |||||||||||||||||||||||| ||||||||||||||  |||| || | ||| | ||||||||||||||||| |||||||| ||||||||| || |||    
T  38595051 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacataagtctgggttttttttcggcaaattcagggaatgacaggaaatatttgtaggg 38595150  T
Q  117 tgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||||||||||||||  |||||||||||||||||||    
T  38595151 tgaaatattttattgaactggaagaataaaaaggaat 38595187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 37108228 - 37108364
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc-ggcaaattcaaggaatgaccggaaatattggtgggg 116  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| || |||| ||||  | |||||||||| |||||||||||||||||| || |||    
T  37108228 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacacatatctggttttttccccggcaaattcagggaatgaccggaaatatttgtaggg 37108327  T
Q  117 tgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||||||||||| ||| |||||||||||||| ||||    
T  37108328 tgaaatattttatggatctggaagaataaaaaagaat 37108364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 1066230 - 1066367
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc--ggcaaattcaaggaatgaccggaaatattggtggg 115  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| || |||| ||||| |  |||||||||| ||| |||||||||||||| || ||    
T  1066230 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacacatatctggtttttttccctggcaaattcagggagtgaccggaaatatttgtagg 1066329  T
Q  116 gtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||| ||| |||||||||||||| ||||    
T  1066330 gtgaaatattttatggatctggaagaataaaaaagaat 1066367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 40304201 - 40304279
Alignment:
Q  74 ttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||| ||||||||||| |||||| || |||||||| || |||||||||||||||| ||| | |||||||||||||||||    
T  40304201 tttttccggcaaattcagggaatg-ccagaaatatttgtagggtgaaatattttatggatcttgaagaataaaaaggaat 40304279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 44894157 - 44894032
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| |||||||||| ||||||| || ||||    
T  44894157 agaagattgaagagagcgaagtaggaacaaagagaaacagcaacacaaatctggt-ttttttcggcaaattcagggaatgaccgaaaatatttgtagggt 44894059  T
Q  118 gaaatattttattgatgtggaagaata 144  Q
    |||||||||||||||||||||||||||    
T  44894058 gaaatattttattgatgtggaagaata 44894032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 32244226 - 32244363
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc--ggcaaattcaaggaatgaccggaaatattggtggg 115  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| || |||  ||||| |  |||||||||| ||||||||| |||||||| || ||    
T  32244226 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacacatatctgggttttttccccggcaaattcagggaatgaccagaaatatttgtagg 32244325  T
Q  116 gtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||| ||| |||||||||||||| ||||    
T  32244326 gtgaaatattttatggatctggaagaataaaaaagaat 32244363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 3866233 - 3866357
Alignment:
Q  31 gagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc--ggcaaattcaaggaatgaccggaaatattggtggggtgaaatatttta 128  Q
    ||||||||||| ||||||||||||||  |||||| || |||| ||||| |  |||||||||| |||||||||||||||||| || ||||||||| |||||    
T  3866233 gagcgaagtagtaacaaagagaaacagtaacacatatctggtttttttccctggcaaattcagggaatgaccggaaatatttgtagggtgaaatgtttta 3866332  T
Q  129 ttgatgtggaagaataaaaaggaat 153  Q
    |  || |||||||||||||| ||||    
T  3866333 tgtatctggaagaataaaaaagaat 3866357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 6243866 - 6243801
Alignment:
Q  84 aaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaag 149  Q
    ||||||| ||||||||| |||||||| || |||||||||||||||| ||| |||||||||||||||    
T  6243866 aaattcagggaatgaccagaaatatttgtagggtgaaatattttatggatctggaagaataaaaag 6243801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 153
Target Start/End: Complemental strand, 44894003 - 44893965
Alignment:
Q  116 gtgaaatattttattgatgtggaagaata-aaaaggaat 153  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  44894003 gtgaaatattttattgatgtggaagaatacaaaaggaat 44893965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 153
Target Start/End: Original strand, 37812806 - 37812947
Alignment:
Q  11 ggagcagagaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattg 110  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||| |||| ||||| ||||||||||| |||||||| |||||||||     
T  37812806 ggagcaaagaagattgaagagagcgaagtagtaacaaagagaaacagtaacacaaatctggt-tttttccggcaaattcagggaatgacaggaaatattt 37812904  T
Q  111 gtggggtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    || |||||||||||||||||||| |||||||||||||||||||    
T  37812905 gtagggtgaaatattttattgatctggaagaataaaaaggaat 37812947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 153
Target Start/End: Original strand, 19333005 - 19333151
Alignment:
Q  10 aggagcagagaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtctttttt---cggcaaattcaaggaatgaccggaaat 106  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||  ||||||||| |||| ||||||   |||||||||||||||||||| ||||||    
T  19333005 aggagcaaagaagattgaagagagagaagtagtaacaaagagaaacagtaacacaaatctggttttttttttccggcaaattcaaggaatgacaggaaat 19333104  T
Q  107 attggtggggtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||  | |||||||||||||||||||  |||||||||||||||||||    
T  19333105 atttttagggtgaaatattttattgaactggaagaataaaaaggaat 19333151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 40272924 - 40272788
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc-ggcaaattcaaggaatgaccggaaatattggtgggg 116  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| || |||  ||||| | |||||||||||||||||||| |||||||| || |||    
T  40272924 agaagattgaagagagcgaagtagtaacaaagagaaacaataacacatatctgggttttttcccggcaaattcaaggaatgaccagaaatatttgtaggg 40272825  T
Q  117 tgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||| || ||| |||||||||||||| ||||    
T  40272824 tgaaatatttgatggatctggaagaataaaaaagaat 40272788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 43210453 - 43210587
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtctttttt---cggcaaattcaaggaatgaccggaaatattggtgg 114  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||  |   ||| ||   ||| |||||||  ||||||||| ||||||| ||      
T  43210453 agaagattgaagagagcgaagtagtaacaaagagaaacaataacacaaatcagagttttcttatccgggaaattcagtgaatgaccgaaaatatttgtat 43210552  T
Q  115 ggtgaaatattttattgatgtggaagaataaaaag 149  Q
    |||||||||||||||  || |||||||||||||||    
T  43210553 ggtgaaatattttatgaatctggaagaataaaaag 43210587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 52010412 - 52010542
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||| |||| ||||| ||||||||||| |||||||  ||||||||| || ||||    
T  52010412 agaagattgaagagagcgaagtaggaacaaagagaaacagtaacacaaatctggt-tttttccggcaaattcagggaatgattggaaatatttgtagggt 52010510  T
Q  118 gaaatattttattgatgtggaagaataaaaag 149  Q
    |||||||||||||||| |||||||||||||||    
T  52010511 gaaatattttattgatttggaagaataaaaag 52010542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 11397584 - 11397724
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtctttttt-----cggcaaattcaaggaatgaccggaaatattggt 112  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||| |||| ||||||     ||||||||||| |||||||| ||||||||| ||    
T  11397584 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacacaaatctggttttttttttttccggcaaattcagggaatgacaggaaatatttgt 11397683  T
Q  113 ggggtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
     |||||||||||||||||||  |||||||||||||||||||    
T  11397684 agggtgaaatattttattgaattggaagaataaaaaggaat 11397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 25352505 - 25352639
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    ||||||||||||||||  ||||||||| |||||||||||  ||||||||| || | ||||| || |||||| | |||||||||||||||||| || ||||    
T  25352505 agaagattgaagagagtaaagtaggaataaagagaaacagtaacacaaatctgat-tttttccgacaaatttagggaatgaccggaaatatttgtagggt 25352603  T
Q  118 gaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||||| | |||||||||||||||||    
T  25352604 gaaatattttattgatctagaagaataaaaaggaat 25352639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 52882139 - 52882274
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    ||||||||||||||||| |||||| ||||||||||||||  ||||||||| || | ||||| | ||||||||| |||||||||| ||||||| |  ||||    
T  52882139 agaagattgaagagagcaaagtagtaacaaagagaaacagtaacacaaatctgatttttttcctgcaaattcagggaatgaccgaaaatatttgcagggt 52882238  T
Q  118 gaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||||||||||  || | |||||||||||||||||    
T  52882239 gaaatattttatgaatctcgaagaataaaaaggaat 52882274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 49768236 - 49768373
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcg--gcaaattcaaggaatgaccggaaatattggtggg 115  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| || |||| ||||| |   ||||||||| |||||||||||||||||| |  ||    
T  49768236 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacacatatttggtttttttccccagcaaattcagggaatgaccggaaatatttgcagg 49768335  T
Q  116 gtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||| ||| | |||||||||||| ||||    
T  49768336 gtgaaatattttatggatctagaagaataaaaaagaat 49768373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 148
Target Start/End: Complemental strand, 27551254 - 27551126
Alignment:
Q  22 gattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc--ggcaaattcaaggaatgaccggaaatattggtggggtga 119  Q
    |||||||||||| ||||||| ||||||||||||||| |||||| || || | ||||| |  |||||||||| |||||||| ||||||||| || ||||||    
T  27551254 gattgaagagagtgaagtagtaacaaagagaaacaataacacatatctgctttttttcccaggcaaattcagggaatgactggaaatatttgtagggtga 27551155  T
Q  120 aatattttattgatgtggaagaataaaaa 148  Q
    |||||||||| ||| ||||||||||||||    
T  27551154 aatattttatggatctggaagaataaaaa 27551126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 7e-36; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 31991635 - 31991771
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttt-tcggcaaattcaaggaatgaccggaaatattggtgggg 116  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| || || | ||||| |||||||||||| | |||||||||||||||| || |||    
T  31991635 agaagattgaagagagcgaagtagtaacaaagagaaacaataacacatatttgttttttttctcggcaaattcaggaaatgaccggaaatatttgtaggg 31991734  T
Q  117 tgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||||||||||| ||| ||||||||||| |||||||    
T  31991735 tgaaatattttatggatctggaagaataataaggaat 31991771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 44556383 - 44556246
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc--ggcaaattcaaggaatgaccggaaatattggtggg 115  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||| || |||  ||||| |  |||||||||| |||||||||||||||||| || ||    
T  44556383 agaagattgaagagagcgaagtagtaacaaagagaaacaataacacatatctgggttttttccccggcaaattcagggaatgaccggaaatatttgtagg 44556284  T
Q  116 gtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||| ||| | |||||||||||| ||||    
T  44556283 gtgaaatattttatggatctagaagaataaaaaagaat 44556246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 33475934 - 33475798
Alignment:
Q  19 gaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc--ggcaaattcaaggaatgaccggaaatattggtgggg 116  Q
    ||||||||||||||||||||||| ||||||||||||||  |||||| || |||   |||| |  |||||||||| ||||||||| |||||||| || |||    
T  33475934 gaagattgaagagagcgaagtagtaacaaagagaaacagtaacacatatctgggtgttttccccggcaaattcagggaatgaccagaaatatttgtaggg 33475835  T
Q  117 tgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||||||||||| ||| |||||||||||||| ||||    
T  33475834 tgaaatattttatggatctggaagaataaaaaagaat 33475798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 52701707 - 52701855
Alignment:
Q  12 gagcagagaagattgaa--gagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtctttttt-----cggcaaattcaaggaatgaccggaa 104  Q
    ||||| |||||||||||  ||||||||||||| ||||||||||||||  |||| |||| |||| ||||||     ||||||||| | |||||||| ||||    
T  52701707 gagcaaagaagattgaaaagagagcgaagtagtaacaaagagaaacagtaacataaatctggttttttttttttccggcaaatttagggaatgacaggaa 52701806  T
Q  105 atattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    ||||| || |||||||||||||||||||  |||||||||||||||||||    
T  52701807 atatttgtagggtgaaatattttattgaactggaagaataaaaaggaat 52701855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 8575643 - 8575508
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtctttt-ttcggcaaattcaaggaatgaccggaaatattggtgggg 116  Q
    |||||||||||||||||||| ||| ||||||||||||||| |||||| || |||| ||||   | | |||||||  ||||||||||||||||| || |||    
T  8575643 agaagattgaagagagcgaaatagtaacaaagagaaacaataacacatatttggttttttgcccagaaaattcagtgaatgaccggaaatatttgtaggg 8575544  T
Q  117 tgaaatattttattgatgtggaagaataaaaaggaat 153  Q
     |||||||||||| ||| | |||||||||||||||||    
T  8575543 -gaaatattttatggatctagaagaataaaaaggaat 8575508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 41927784 - 41927897
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtctttttt----cggcaaattcaaggaatgaccggaaatattggtg 113  Q
    |||||||||||||||||||||||| ||||||||||||||  |||||| || || | ||||||    || |||||| | |||||| | ||||||||| ||     
T  41927784 agaagattgaagagagcgaagtagtaacaaagagaaacagtaacacatatctgcttttttttcccccgacaaatttagggaatggctggaaatatttgta 41927883  T
Q  114 gggtgaaatatttt 127  Q
    ||||||||||||||    
T  41927884 gggtgaaatatttt 41927897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 153
Target Start/End: Complemental strand, 32318689 - 32318552
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttc--ggcaaattcaaggaatgaccggaaatattggtggg 115  Q
    ||||||||||| ||||| |||||| ||||||||||||||  |||||| || |||| ||||| |  |||||||||| |||||||||| ||||||| || ||    
T  32318689 agaagattgaaaagagcaaagtagtaacaaagagaaacattaacacatatctggtttttttccctggcaaattcagggaatgaccgaaaatatttgtagg 32318590  T
Q  116 gtgaaatattttattgatgtggaagaataaaaaggaat 153  Q
    |||||||||||||| ||| |||||||||||||| ||||    
T  32318589 gtgaaatattttatggatctggaagaataaaaaagaat 32318552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 3118524 - 3118627
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggt 117  Q
    |||||||| ||||||||||||||| ||||||||||||     ||||| || |||| ||||| |||||||||||||||||||||||||||||| || || |    
T  3118524 agaagattaaagagagcgaagtagtaacaaagagaaa----gacacatatctggtttttttccggcaaattcaaggaatgaccggaaatatttgtaggat 3118619  T
Q  118 gaaatatt 125  Q
    ||||||||    
T  3118620 gaaatatt 3118627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 289439 - 289328
Alignment:
Q  43 aacaaagagaaacaacaacacaaatgtggtcttttttcgg-caaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaaga 141  Q
    |||||||||||| |  |||||| || |||| ||||| | | |||||||| ||||||||| |||||||| || |||||||||||||||| ||| || ||||    
T  289439 aacaaagagaaagagtaacacatatttggtttttttcctgacaaattcagggaatgaccagaaatatttgtagggtgaaatattttatggatctgaaaga 289340  T
Q  142 ataaaaaggaat 153  Q
    ||||||| ||||    
T  289339 ataaaaaagaat 289328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 3914165 - 3914031
Alignment:
Q  18 agaagattgaagagagcgaagtaggaacaaagagaaacaacaacacaaatgtggtc-ttttttcggcaaattcaaggaatgaccggaaatattggtgggg 116  Q
    |||| ||||||||||||||||||| || | |||||||||  |||||| ||  ||   |||||||  |||||| | |||||||||  ||||||| || |||    
T  3914165 agaatattgaagagagcgaagtagtaatagagagaaacagtaacacagatccgggggttttttcaacaaatttagggaatgaccataaatatttgtaggg 3914066  T
Q  117 tgaaatattttattgatgtggaagaataaaaagga 151  Q
    ||||||||| ||| ||| | |||||||||||||||    
T  3914065 tgaaatattctatggatcttgaagaataaaaagga 3914031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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