View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11601_high_12 (Length: 203)

Name: NF11601_high_12
Description: NF11601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11601_high_12
NF11601_high_12
[»] chr4 (3 HSPs)
chr4 (16-121)||(34512640-34512744)
chr4 (16-121)||(28163333-28163439)
chr4 (50-121)||(44452700-44452771)
[»] chr7 (6 HSPs)
chr7 (16-121)||(8833292-8833397)
chr7 (16-121)||(8082386-8082491)
chr7 (42-121)||(38595108-38595187)
chr7 (48-121)||(37108291-37108364)
chr7 (49-121)||(1066295-1066367)
chr7 (42-121)||(40304201-40304279)
[»] chr8 (5 HSPs)
chr8 (16-112)||(44894032-44894127)
chr8 (48-121)||(32244290-32244363)
chr8 (52-117)||(6243801-6243866)
chr8 (49-121)||(3866285-3866357)
chr8 (84-121)||(44893965-44894003)
[»] chr5 (4 HSPs)
chr5 (16-121)||(37812843-37812947)
chr5 (16-121)||(19333043-19333151)
chr5 (16-121)||(40272788-40272894)
chr5 (52-117)||(43210522-43210587)
[»] chr1 (6 HSPs)
chr1 (16-117)||(52010442-52010542)
chr1 (42-121)||(11397645-11397724)
chr1 (16-121)||(25352535-25352639)
chr1 (49-116)||(27551126-27551193)
chr1 (16-121)||(52882169-52882274)
chr1 (50-121)||(49768302-49768373)
[»] chr3 (5 HSPs)
chr3 (16-121)||(31991665-31991771)
chr3 (42-121)||(52701776-52701855)
chr3 (48-121)||(33475798-33475871)
chr3 (48-121)||(44556246-44556319)
chr3 (52-121)||(8575508-8575576)
[»] chr2 (2 HSPs)
chr2 (49-121)||(32318552-32318624)
chr2 (28-93)||(3118562-3118627)
[»] chr6 (2 HSPs)
chr6 (51-121)||(289328-289398)
chr6 (42-119)||(3914031-3914108)


Alignment Details
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 34512744 - 34512640
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaa 115  Q
    ||||||||| |||||||||| |||| ||||||||||||||| | |||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  34512744 agagaaacagcaacacaaatctggt-ttttttcggcaaatttagggaatgaccggaaatatttgtagggtgaaatattttattgatgtggaagaataaaa 34512646  T
Q  116 aggaat 121  Q
    ||||||    
T  34512645 aggaat 34512640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 28163439 - 28163333
Alignment:
Q  16 agagaaacaacaacacaaatgtggtctttttt--cggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataa 113  Q
    |||||||||  ||||||||| || | ||||||  ||||||||||| |||||||||| ||||||| || || ||||||||||||||||| |||||||||||    
T  28163439 agagaaacagtaacacaaatctgatttttttttccggcaaattcagggaatgaccgaaaatatttgtagg-tgaaatattttattgatctggaagaataa 28163341  T
Q  114 aaaggaat 121  Q
    ||||||||    
T  28163340 aaaggaat 28163333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 44452700 - 44452771
Alignment:
Q  50 gcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||||||| |||||||||| |||| || || |||||||||||||||| ||| |||||||||||||| ||||    
T  44452700 gcaaattcagggaatgaccgaaaatgtttgtagggtgaaatattttatggatctggaagaataaaaaagaat 44452771  T

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Target: chr7 (Bit Score: 70; Significance: 9e-32; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 8833292 - 8833397
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaa 115  Q
    ||||||| | |||||||||| |||| ||||||||||||||||| ||||| ||| |||||||| || ||||||||||||||||||||||||||||||||||    
T  8833292 agagaaatagcaacacaaatctggttttttttcggcaaattcagggaattaccagaaatatttgtagggtgaaatattttattgatgtggaagaataaaa 8833391  T
Q  116 aggaat 121  Q
    ||||||    
T  8833392 aggaat 8833397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 8082386 - 8082491
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaata-aa 114  Q
    ||||||||| |||||||||| |||| ||||| ||||||||||| |||||||||| || |||| || ||||||||||||||||||||||||||||||| ||    
T  8082386 agagaaacagcaacacaaatctggt-tttttccggcaaattcagggaatgaccgaaagtatttgtagggtgaaatattttattgatgtggaagaatacaa 8082484  T
Q  115 aaggaat 121  Q
    |||||||    
T  8082485 aaggaat 8082491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 38595108 - 38595187
Alignment:
Q  42 ttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||||||||||||||| |||||||| ||||||||| || |||||||||||||||||||  |||||||||||||||||||    
T  38595108 ttttttcggcaaattcagggaatgacaggaaatatttgtagggtgaaatattttattgaactggaagaataaaaaggaat 38595187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 37108291 - 37108364
Alignment:
Q  48 cggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||    
T  37108291 cggcaaattcagggaatgaccggaaatatttgtagggtgaaatattttatggatctggaagaataaaaaagaat 37108364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 1066295 - 1066367
Alignment:
Q  49 ggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    |||||||||| ||| |||||||||||||| || |||||||||||||||| ||| |||||||||||||| ||||    
T  1066295 ggcaaattcagggagtgaccggaaatatttgtagggtgaaatattttatggatctggaagaataaaaaagaat 1066367  T

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Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 40304201 - 40304279
Alignment:
Q  42 ttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||| ||||||||||| |||||| || |||||||| || |||||||||||||||| ||| | |||||||||||||||||    
T  40304201 tttttccggcaaattcagggaatg-ccagaaatatttgtagggtgaaatattttatggatcttgaagaataaaaaggaat 40304279  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 16 - 112
Target Start/End: Complemental strand, 44894127 - 44894032
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaata 112  Q
    ||||||||| |||||||||| |||| ||||||||||||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||||    
T  44894127 agagaaacagcaacacaaatctggt-ttttttcggcaaattcagggaatgaccgaaaatatttgtagggtgaaatattttattgatgtggaagaata 44894032  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 32244290 - 32244363
Alignment:
Q  48 cggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||||||||| ||||||||| |||||||| || |||||||||||||||| ||| |||||||||||||| ||||    
T  32244290 cggcaaattcagggaatgaccagaaatatttgtagggtgaaatattttatggatctggaagaataaaaaagaat 32244363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 6243866 - 6243801
Alignment:
Q  52 aaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaag 117  Q
    ||||||| ||||||||| |||||||| || |||||||||||||||| ||| |||||||||||||||    
T  6243866 aaattcagggaatgaccagaaatatttgtagggtgaaatattttatggatctggaagaataaaaag 6243801  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 121
Target Start/End: Original strand, 3866285 - 3866357
Alignment:
Q  49 ggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    |||||||||| |||||||||||||||||| || ||||||||| ||||||  || |||||||||||||| ||||    
T  3866285 ggcaaattcagggaatgaccggaaatatttgtagggtgaaatgttttatgtatctggaagaataaaaaagaat 3866357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 121
Target Start/End: Complemental strand, 44894003 - 44893965
Alignment:
Q  84 gtgaaatattttattgatgtggaagaata-aaaaggaat 121  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  44894003 gtgaaatattttattgatgtggaagaatacaaaaggaat 44893965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 5e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 37812843 - 37812947
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaa 115  Q
    |||||||||  ||||||||| |||| ||||| ||||||||||| |||||||| ||||||||| || |||||||||||||||||||| |||||||||||||    
T  37812843 agagaaacagtaacacaaatctggt-tttttccggcaaattcagggaatgacaggaaatatttgtagggtgaaatattttattgatctggaagaataaaa 37812941  T
Q  116 aggaat 121  Q
    ||||||    
T  37812942 aggaat 37812947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 19333043 - 19333151
Alignment:
Q  16 agagaaacaacaacacaaatgtggtctttttt---cggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaata 112  Q
    |||||||||  ||||||||| |||| ||||||   |||||||||||||||||||| |||||||||  | |||||||||||||||||||  ||||||||||    
T  19333043 agagaaacagtaacacaaatctggttttttttttccggcaaattcaaggaatgacaggaaatatttttagggtgaaatattttattgaactggaagaata 19333142  T
Q  113 aaaaggaat 121  Q
    |||||||||    
T  19333143 aaaaggaat 19333151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 40272894 - 40272788
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttc-ggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaa 114  Q
    |||||||||| |||||| || |||  ||||| | |||||||||||||||||||| |||||||| || ||||||||||||| || ||| ||||||||||||    
T  40272894 agagaaacaataacacatatctgggttttttcccggcaaattcaaggaatgaccagaaatatttgtagggtgaaatatttgatggatctggaagaataaa 40272795  T
Q  115 aaggaat 121  Q
    || ||||    
T  40272794 aaagaat 40272788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 43210522 - 43210587
Alignment:
Q  52 aaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaag 117  Q
    |||||||  ||||||||| ||||||| ||  |||||||||||||||  || |||||||||||||||    
T  43210522 aaattcagtgaatgaccgaaaatatttgtatggtgaaatattttatgaatctggaagaataaaaag 43210587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 3e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 52010442 - 52010542
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaa 115  Q
    |||||||||  ||||||||| |||| ||||| ||||||||||| |||||||  ||||||||| || |||||||||||||||||||| |||||||||||||    
T  52010442 agagaaacagtaacacaaatctggt-tttttccggcaaattcagggaatgattggaaatatttgtagggtgaaatattttattgatttggaagaataaaa 52010540  T
Q  116 ag 117  Q
    ||    
T  52010541 ag 52010542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 11397645 - 11397724
Alignment:
Q  42 ttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||| ||||||||||| |||||||| ||||||||| || |||||||||||||||||||  |||||||||||||||||||    
T  11397645 tttttccggcaaattcagggaatgacaggaaatatttgtagggtgaaatattttattgaattggaagaataaaaaggaat 11397724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 25352535 - 25352639
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaa 115  Q
    |||||||||  ||||||||| || | ||||| || |||||| | |||||||||||||||||| || |||||||||||||||||||| | |||||||||||    
T  25352535 agagaaacagtaacacaaatctgat-tttttccgacaaatttagggaatgaccggaaatatttgtagggtgaaatattttattgatctagaagaataaaa 25352633  T
Q  116 aggaat 121  Q
    ||||||    
T  25352634 aggaat 25352639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 116
Target Start/End: Complemental strand, 27551193 - 27551126
Alignment:
Q  49 ggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaa 116  Q
    |||||||||| |||||||| ||||||||| || |||||||||||||||| ||| ||||||||||||||    
T  27551193 ggcaaattcagggaatgactggaaatatttgtagggtgaaatattttatggatctggaagaataaaaa 27551126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 52882169 - 52882274
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaa 115  Q
    |||||||||  ||||||||| || | ||||| | ||||||||| |||||||||| ||||||| |  ||||||||||||||||  || | |||||||||||    
T  52882169 agagaaacagtaacacaaatctgatttttttcctgcaaattcagggaatgaccgaaaatatttgcagggtgaaatattttatgaatctcgaagaataaaa 52882268  T
Q  116 aggaat 121  Q
    ||||||    
T  52882269 aggaat 52882274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 49768302 - 49768373
Alignment:
Q  50 gcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||||||| |||||||||||||||||| |  |||||||||||||||| ||| | |||||||||||| ||||    
T  49768302 gcaaattcagggaatgaccggaaatatttgcagggtgaaatattttatggatctagaagaataaaaaagaat 49768373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 31991665 - 31991771
Alignment:
Q  16 agagaaacaacaacacaaatgtggtcttttt-tcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaa 114  Q
    |||||||||| |||||| || || | ||||| |||||||||||| | |||||||||||||||| || |||||||||||||||| ||| |||||||||||     
T  31991665 agagaaacaataacacatatttgttttttttctcggcaaattcaggaaatgaccggaaatatttgtagggtgaaatattttatggatctggaagaataat 31991764  T
Q  115 aaggaat 121  Q
    |||||||    
T  31991765 aaggaat 31991771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 52701776 - 52701855
Alignment:
Q  42 ttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||| ||||||||| | |||||||| ||||||||| || |||||||||||||||||||  |||||||||||||||||||    
T  52701776 tttttccggcaaatttagggaatgacaggaaatatttgtagggtgaaatattttattgaactggaagaataaaaaggaat 52701855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 33475871 - 33475798
Alignment:
Q  48 cggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||||||||| ||||||||| |||||||| || |||||||||||||||| ||| |||||||||||||| ||||    
T  33475871 cggcaaattcagggaatgaccagaaatatttgtagggtgaaatattttatggatctggaagaataaaaaagaat 33475798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 44556319 - 44556246
Alignment:
Q  48 cggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    ||||||||||| |||||||||||||||||| || |||||||||||||||| ||| | |||||||||||| ||||    
T  44556319 cggcaaattcagggaatgaccggaaatatttgtagggtgaaatattttatggatctagaagaataaaaaagaat 44556246  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 8575576 - 8575508
Alignment:
Q  52 aaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    |||||||  ||||||||||||||||| || ||| |||||||||||| ||| | |||||||||||||||||    
T  8575576 aaattcagtgaatgaccggaaatatttgtaggg-gaaatattttatggatctagaagaataaaaaggaat 8575508  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 49 - 121
Target Start/End: Complemental strand, 32318624 - 32318552
Alignment:
Q  49 ggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    |||||||||| |||||||||| ||||||| || |||||||||||||||| ||| |||||||||||||| ||||    
T  32318624 ggcaaattcagggaatgaccgaaaatatttgtagggtgaaatattttatggatctggaagaataaaaaagaat 32318552  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 3118562 - 3118627
Alignment:
Q  28 acacaaatgtggtcttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatatt 93  Q
    ||||| || |||| ||||| |||||||||||||||||||||||||||||| || || |||||||||    
T  3118562 acacatatctggtttttttccggcaaattcaaggaatgaccggaaatatttgtaggatgaaatatt 3118627  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 289398 - 289328
Alignment:
Q  51 caaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaaggaat 121  Q
    |||||||| ||||||||| |||||||| || |||||||||||||||| ||| || ||||||||||| ||||    
T  289398 caaattcagggaatgaccagaaatatttgtagggtgaaatattttatggatctgaaagaataaaaaagaat 289328  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 3914108 - 3914031
Alignment:
Q  42 ttttttcggcaaattcaaggaatgaccggaaatattggtggggtgaaatattttattgatgtggaagaataaaaagga 119  Q
    |||||||  |||||| | |||||||||  ||||||| || |||||||||||| ||| ||| | |||||||||||||||    
T  3914108 ttttttcaacaaatttagggaatgaccataaatatttgtagggtgaaatattctatggatcttgaagaataaaaagga 3914031  T

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