View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11601_high_2 (Length: 357)
Name: NF11601_high_2
Description: NF11601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11601_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39330722 - 39330504
Alignment:
| Q |
1 |
tttgccgcgcgtattcttctctgcaacaaaccacgtacattgtactcctttcacgccatgtatgtttttgtgttaacaaagattgtgaccaatgtaacac |
100 |
Q |
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| T |
39330722 |
tttgccgcgcgtattcttctctgcaacaaaccacgtacattgtactcctttcacgccatgtatgttt--gtgttaacaaagattgtgaccaatgtaacac |
39330625 |
T |
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| Q |
101 |
cattaaatattgcaactatataattaaatacacacctctgcaagccaatactgtgtattactaatgccaccaactacgtacatttcttttcagctgaatt |
200 |
Q |
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| T |
39330624 |
cattaaatattgcaactatataattaaatacacacctctgcaagccaatactgtgtattactaatgccaccaactacgtacatttcttttcagctgaatt |
39330525 |
T |
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| Q |
201 |
aaattttaacagaattaacat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
39330524 |
aaattttaacagaattaacat |
39330504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 224 - 345
Target Start/End: Complemental strand, 39330468 - 39330347
Alignment:
| Q |
224 |
ataggtgtgtatagtatttatcacaccaacaatgaacttagaaatttgttaccattgatatgatatgaatgataaaattgtggttcacgttatgtgaatt |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39330468 |
ataggtgtgtatagtatttatcacaccaacaatgaacttagaaatttgttaccattgatatgataggaatgataaaattgtggttcacgttatgtgaatt |
39330369 |
T |
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| Q |
324 |
tatctgaataccttctgcttct |
345 |
Q |
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|||||||||||||||||||||| |
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| T |
39330368 |
tatctgaataccttctgcttct |
39330347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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