View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11601_high_5 (Length: 275)
Name: NF11601_high_5
Description: NF11601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11601_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 698771 - 698523
Alignment:
| Q |
18 |
catatactagtaatttgctaattttatgtattaagcaaaacaacttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
698771 |
catatactagtaatttgctaattttatgtattaagcaaaacaacttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcat |
698672 |
T |
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| Q |
118 |
ttgtttctaaaatatggcaatagtactttccgagcttcatcgccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaat |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
698671 |
ttgtttccaaaatatggcaatagtactttccgagcttcatcgccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaat |
698572 |
T |
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| Q |
218 |
actatcctatggccaagatcttcacatgcaccacacctagagcctatgc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
698571 |
actatcctatggccaagatcttcacatgcaccacacctagagcctatgc |
698523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Complemental strand, 767069 - 766821
Alignment:
| Q |
18 |
catatactagtaatttgctaattttatgtattaagcaaaacaacttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
767069 |
catatactagtaatttgctaattttatgtattaagcaaaacaacttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcat |
766970 |
T |
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| Q |
118 |
ttgtttctaaaatatggcaatagtactttccgagcttcatcgccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaat |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
766969 |
ttgtttccaaaatatggcaatagtactttccgagcttcatcgccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaat |
766870 |
T |
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| Q |
218 |
actatcctatggccaagatcttcacatgcaccacacctagagcctatgc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
766869 |
actatcctatggccaagatcttcacatgcaccacacctagagcctatgc |
766821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 36963164 - 36963412
Alignment:
| Q |
18 |
catatactagtaatttgctaattttatgtattaagcaaaacaacttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963164 |
catatactagtaatttgctaattttatgtattaagcaaaacaacttaatataggaatcaatcaaagcacaagtacatatgtgagatgtgactcatttcat |
36963263 |
T |
|
| Q |
118 |
ttgtttctaaaatatggcaatagtactttccgagcttcatcgccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaat |
217 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963264 |
ttgtttccaaaatatggcaatagtactttccgagcttcatcgccatttttaaccttttctttgaaaatatcacatcacaaacaacccccaccatgtgaat |
36963363 |
T |
|
| Q |
218 |
actatcctatggccaagatcttcacatgcaccacacctagagcctatgc |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36963364 |
actatcctatggccaagatcttcacatgcaccacacctagagcctatgc |
36963412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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