View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11601_high_8 (Length: 242)
Name: NF11601_high_8
Description: NF11601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11601_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 31950622 - 31950849
Alignment:
| Q |
1 |
atcatctgcaacaaaagttttgcatgttaccatggagacttaaaaaatagtcaaaccaacatttatctcgtgtttttagttcgtcacaattaaggtcgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31950622 |
atcatctgcaacaaaagttttgcatgttaccatggagacttaaaaaatagtcaaaccaacatttatctcgtgttttaagttcgtcacaattaaggtcgca |
31950721 |
T |
|
| Q |
101 |
atgtagttgcaaaaactactaaaactgtataatgcatttcgaaaccatcatataggcctgtcacgaaaaagaatggaaattgagagaaaaaagacatacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |
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| T |
31950722 |
atgtagttgcaaaaactactaaaactgtataatgcatttcgaaaccatcatataggcctgtcacgaaaaaggatggaaatggagagataaaagacatacc |
31950821 |
T |
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| Q |
201 |
atggagcaaataatatccgtgtgatatt |
228 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
31950822 |
atggagcaaataatatccgtgcgatatt |
31950849 |
T |
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