View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_14 (Length: 326)
Name: NF11602_high_14
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 29 - 300
Target Start/End: Complemental strand, 4632786 - 4632517
Alignment:
| Q |
29 |
ttttcgactcttatagccttaaagagattcaacctgatgcatttgtaacatgttatttatgttataattcttatctcatttttgtgtgaaaggatgaaat |
128 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632786 |
tttttgactcttatagccttaaagagattcaacttgatgcatttgtaacatgttatttatgttataattcttatctcatttttgtgtgaaaggatgaaat |
4632687 |
T |
|
| Q |
129 |
atttcaatttataaagctccaaatagcaaagaaaataaagatgcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttact |
228 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4632686 |
atttcaatttataaagctccaaatagcaaagaaagtaaagatgcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatcttact |
4632587 |
T |
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| Q |
229 |
catatacaaataatgctgggaaaaaattacaagaaacaggttcaactttcttgagtggattctcgcaatgat |
300 |
Q |
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| T |
4632586 |
c--atacaaataatgctgggaaaaaattacaagaaacaggttcaactttcttgagtggattctcgcaatgat |
4632517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 29 - 288
Target Start/End: Complemental strand, 27590902 - 27590643
Alignment:
| Q |
29 |
ttttcgactcttatagcct-taaagagattcaacctgatgcatttgtaacatgttatttatgttataattcttatctcattttt-gtgtgaaaggatgaa |
126 |
Q |
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|||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
27590902 |
ttttggactcttatagcctctaaagagattcaacttgatgcatttgtaacatgttatttatgttgtaattcttatctcattttttgtgtgaaaggatgag |
27590803 |
T |
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| Q |
127 |
atatttcaatttataaagctccaaatagcaaagaaaataaagatgcattatatattttctgcaatatgcagagaaatcagtggatttaactttgatctta |
226 |
Q |
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||||||||| | |||||||||||||| ||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27590802 |
atatttcaactcataaagctccaaatggcaaagaaagtaaagacgcattgtatgttttctgcaatatgcagagaaatcagtggattt--ctttgatctta |
27590705 |
T |
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| Q |
227 |
ctcatatacaaataatgctgggaaaaaattacaagaaacaggttcaactttcttgagtggat |
288 |
Q |
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||||||||||||||||||| | ||||||||||| |||||| || |||||||||||||||||| |
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| T |
27590704 |
ctcatatacaaataatgctcgaaaaaaattacatgaaacatgtccaactttcttgagtggat |
27590643 |
T |
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