View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11602_high_18 (Length: 306)
Name: NF11602_high_18
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 48 - 277
Target Start/End: Complemental strand, 11119345 - 11119116
Alignment:
| Q |
48 |
tgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttc |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119345 |
tgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttc |
11119246 |
T |
|
| Q |
148 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11119245 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
11119146 |
T |
|
| Q |
248 |
gttcttgtctaatttatcaggagttgttgg |
277 |
Q |
| |
|
||||||||| |||||||| ||||||||||| |
|
|
| T |
11119145 |
gttcttgtcgaatttatcgggagttgttgg |
11119116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 51 - 277
Target Start/End: Complemental strand, 11111571 - 11111345
Alignment:
| Q |
51 |
tttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaa |
150 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||| |
|
|
| T |
11111571 |
tttctaatttctcctttctttccggtaagcacatcaatattacccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaa |
11111472 |
T |
|
| Q |
151 |
agttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagtt |
250 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
11111471 |
agctgttgacaatgctaatggtatctgcacccggtgttgagaataattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagtt |
11111372 |
T |
|
| Q |
251 |
cttgtctaatttatcaggagttgttgg |
277 |
Q |
| |
|
|||||| ||| |||||||||| ||||| |
|
|
| T |
11111371 |
cttgtccaatgtatcaggagtcgttgg |
11111345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 57 - 277
Target Start/End: Original strand, 10793229 - 10793449
Alignment:
| Q |
57 |
atttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgt |
156 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||| ||| |||||| || ||||||| || ||||||| | |
|
|
| T |
10793229 |
atttctcctttctttccggtaagcacaccaatattacccattttaatcattgctttcttaaagctctcaaagaaagcactttggttattggcaaagttat |
10793328 |
T |
|
| Q |
157 |
tgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtc |
256 |
Q |
| |
|
| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |
|
|
| T |
10793329 |
taacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtcactttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtc |
10793428 |
T |
|
| Q |
257 |
taatttatcaggagttgttgg |
277 |
Q |
| |
|
||| |||||||||| ||||| |
|
|
| T |
10793429 |
caatgtatcaggagtagttgg |
10793449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 51 - 277
Target Start/End: Complemental strand, 11156823 - 11156597
Alignment:
| Q |
51 |
tttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaa |
150 |
Q |
| |
|
|||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| | ||||| | | | | | |
|
|
| T |
11156823 |
tttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaagcgttttgatcggtgctga |
11156724 |
T |
|
| Q |
151 |
agttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagtt |
250 |
Q |
| |
|
| ||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||| ||| ||||| |
|
|
| T |
11156723 |
atttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcacttgaagattggagtaatagtt |
11156624 |
T |
|
| Q |
251 |
cttgtctaatttatcaggagttgttgg |
277 |
Q |
| |
|
|||||| |||||||||||||| ||||| |
|
|
| T |
11156623 |
cttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
148 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
247 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
|
|
| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
|
| Q |
248 |
gttcttgtctaatttatcaggagttgttgg |
277 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
|
|
| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 153 - 277
Target Start/End: Complemental strand, 11137779 - 11137655
Alignment:
| Q |
153 |
ttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttct |
252 |
Q |
| |
|
||||||||||||||||||||||| ||||| | ||| ||||| | ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
11137779 |
ttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctgaagattggagtagtagttct |
11137680 |
T |
|
| Q |
253 |
tgtctaatttatcaggagttgttgg |
277 |
Q |
| |
|
|||| |||||||||||||| ||||| |
|
|
| T |
11137679 |
tgtcaaatttatcaggagtcgttgg |
11137655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 148 - 277
Target Start/End: Complemental strand, 11150058 - 11149929
Alignment:
| Q |
148 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
247 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||| || |
|
|
| T |
11150058 |
caaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttgaagattagagtaata |
11149959 |
T |
|
| Q |
248 |
gttcttgtctaatttatcaggagttgttgg |
277 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |
|
|
| T |
11149958 |
gttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 11137881 - 11137826
Alignment:
| Q |
51 |
tttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcat |
106 |
Q |
| |
|
|||||||| |||||||| || || || ||||| ||||||||||||||||||||||| |
|
|
| T |
11137881 |
tttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcat |
11137826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
167 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
225 |
Q |
| |
|
||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
|
|
| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University