View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_19 (Length: 303)
Name: NF11602_high_19
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 146 - 292
Target Start/End: Complemental strand, 40433984 - 40433838
Alignment:
| Q |
146 |
accatgtgtgtttctgttatttttcatcaaatatattgatatgtccaattagttagataataataatctctcgtgttttaggatttctaaattatatttg |
245 |
Q |
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| T |
40433984 |
accatgtgtgtttctgttatttttcatcaaatatattgatatgtccaattagttagataataataatctctcgtgttttaggatttctaaattatatttg |
40433885 |
T |
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| Q |
246 |
tatctgaatggaatcacgttcaatcttaaccttgtccttgtccctat |
292 |
Q |
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| T |
40433884 |
tatctcaatggaatcacgttcaatcttaaccttgtccttgtacctat |
40433838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 40434104 - 40434055
Alignment:
| Q |
30 |
aatttctccttctgttttacatttttacacatgtttctttatctcccttg |
79 |
Q |
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| T |
40434104 |
aatttctccttctgttttacatttttacacatgtttctttatctcccttg |
40434055 |
T |
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