View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_1_N (Length: 534)
Name: NF11602_high_1_N
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 10 - 502
Target Start/End: Original strand, 41999818 - 42000306
Alignment:
| Q |
10 |
attatactagttgaagaaattgtaggaatatatggggtgaatttgggagtgtagaggataagattgtgggatttttgtggggatagaagaaaatatggcg |
109 |
Q |
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| T |
41999818 |
attatactagttgaagaaattgtaggaatatatggggtgaatttgggagtgtagaggataagattgtgggatttttgtggggatagaagaaaatatggcg |
41999917 |
T |
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| Q |
110 |
ccagacaaagagattgagatttaaaggatgcacatggtgctctgaactcaattatgaggctgacagtgtttttcttctatatctt-ggcgagcaatgaga |
208 |
Q |
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| T |
41999918 |
ccagacaaagagattgagatttaaaggatgcacatggtgctctgaactcaattatgaggctgacagtgtttttcttctatattttcaatgaacaa--ata |
42000015 |
T |
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| Q |
209 |
tggacatcatcatgttaggtatttgtcattaattactcacttcattcgatttctaattgatgttttaatattttaaatttattttaaaactattcatgtt |
308 |
Q |
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| T |
42000016 |
ttcactcaatcatgttaggtatttgtcattaattactcacttcattcgatttctaattgatgttttaatattttaaatttattttaaaactattcatgtt |
42000115 |
T |
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| Q |
309 |
ttatatgcaagnnnnnnnctatcgagtatcataagcaagcacaaccaaatgttaaaaacttcaacgaattgaacatttgatatattaagatatgagtttg |
408 |
Q |
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| T |
42000116 |
ttatatgcaag---aaaactatcgagtatcataagcaagcacaaccaaatgttaaaaacttcaacgaattgaacatttgttatattaaggtatgagtttg |
42000212 |
T |
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| Q |
409 |
aatccataattctacactttttcattcttaatattttgtgattttcgatagtaaaatttttaaacaaaaaataaataattatatacccagaact |
502 |
Q |
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| T |
42000213 |
aatccataattctacactttttcattcttaatattttgtgattttcgatagtagaatttttaaacaaaaaataaataattatatacccagaact |
42000306 |
T |
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