View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_2 (Length: 475)
Name: NF11602_high_2
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 66 - 444
Target Start/End: Original strand, 53491272 - 53491649
Alignment:
| Q |
66 |
cagtagaagcaaaatgacatatgtaagacttggcgagcaatgagatggacatcatcgataacctgcttatttactaaatcctttggcccaatttcaatcc |
165 |
Q |
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|||||||||||||||||||||||||||| | |||||| | | | ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491272 |
cagtagaagcaaaatgacatatgtaagaatataagagcaacaacaag-acaacatagataacctgcttatttactaaatcctttggcccaatttcaatcc |
53491370 |
T |
|
| Q |
166 |
ttagagggacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctctagaatctaactcagcacgtattttttgcttcacacaaca |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491371 |
ttagagggacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctctagaatctaactcagcacgtattttttgcttcacacaaca |
53491470 |
T |
|
| Q |
266 |
tattcgcagttgctttacaagtatcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagtcgatgctactttaggagg |
365 |
Q |
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| T |
53491471 |
tattcacagttgctttacaagtgtcatagattccttgagtatcaacatctttgtaaggcactggaatcacaatgacttgagttgatgctactttaggagg |
53491570 |
T |
|
| Q |
366 |
tagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacgaaaatataaatgc |
444 |
Q |
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| T |
53491571 |
tagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgc |
53491649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 112 - 444
Target Start/End: Original strand, 53498911 - 53499242
Alignment:
| Q |
112 |
ggacatcatcgataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcagg |
211 |
Q |
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| T |
53498911 |
ggacaacatagataacctgtttattttctaaatccattggcctaatttcaatccttagagggacgcctttcatttcccattcagaatacttcttttcagg |
53499010 |
T |
|
| Q |
212 |
agaacagttatctctagaatctaactcagcacgtattttttgcttcacacaacatattcgcagttgctttacaagtatcatagattccttgagtatcaac |
311 |
Q |
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||| || ||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
53499011 |
agagtagctatctctagaatctaactcagcacgtatttt-tgcttcacacagcatattcacagttgctttacaagtgtcatagattccttgagtatcaac |
53499109 |
T |
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| Q |
312 |
atctttgtaaggcactggaatcacaatgacttgagtcgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctcca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
53499110 |
atctttgtaaggcactggaatcacaatgacttgagttgatgctactttaggaggtagcaccaatcccttgtcatcgccatgaaccatcaccattgctcca |
53499209 |
T |
|
| Q |
412 |
atctgttaaaaaagcggacgaaaatataaatgc |
444 |
Q |
| |
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|||||||||| |||||||| ||||||||||||| |
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| T |
53499210 |
atctgttaaataagcggactaaaatataaatgc |
53499242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 123 - 419
Target Start/End: Original strand, 16070008 - 16070303
Alignment:
| Q |
123 |
ataacctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaacagttat |
222 |
Q |
| |
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||||||||||||||| ||||| ||||| |||||||||||| | ||| |||||||||||||| |||||| ||||||||||| |||||| ||||| |||||| |
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| T |
16070008 |
ataacctgcttatttcctaaaccctttagcccaatttcaaccattaaagggacacctttcatttcccattcagaatactttctttcaagagaatagttat |
16070107 |
T |
|
| Q |
223 |
ctctagaatctaactcagcacgtattttttgcttcacacaacatattcgcagttgctttacaagtatcatagattccttgagtatcaacatctttgtaag |
322 |
Q |
| |
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|||||||||||||||| ||||| ||||||| |||||| |||||| ||| | | ||||||||||| |||| |||||||| | |||||| | |||||||| |
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| T |
16070108 |
ctctagaatctaactcggcacgaatttttt-cttcacgcaacatcttcacggctgctttacaagcgtcattgattccttcacaatcaacgtttttgtaag |
16070206 |
T |
|
| Q |
323 |
gcactggaatcacaatgacttgagtcgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgtta |
419 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
16070207 |
gcactggaatcacaatgacttgagttgatgctactttaggcggtagcaccaatcccttgtcatcaccatgaaccatcaccatcactccaatctgtta |
16070303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 159 - 197
Target Start/End: Original strand, 53516478 - 53516516
Alignment:
| Q |
159 |
tcaatccttagagggacacctttcaattcccaatcagaa |
197 |
Q |
| |
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| T |
53516478 |
tcaatccttagagggacacctttcatttcccattcagaa |
53516516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 126 - 427
Target Start/End: Complemental strand, 45355440 - 45355140
Alignment:
| Q |
126 |
acctgcttatttactaaatcctttggcccaatttcaatccttagagggacacctttcaattcccaatcagaatacttcctttcaggagaacagttatctc |
225 |
Q |
| |
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|||||||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| |||||| | |||||| |||| | |||||||| |||| |||| |
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| T |
45355440 |
acctgcttatttgctaaatccttgggcccgatttcaatccttagaggaacacctttcatttcccactgagaatatttccatccaggagaatagttgtctc |
45355341 |
T |
|
| Q |
226 |
tagaatctaactcagcacgtattttttgcttcacacaacatattcgcagttgctttacaagtatcatagattccttgagtatcaacatctttgtaaggca |
325 |
Q |
| |
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| | |||| |||||||||| ||| | ||||| ||||||||||| ||||||| |||| | |||| ||||||||||||||||| ||||||||||||||| |
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| T |
45355340 |
tggcatctgactcagcacgaattcct-gcttccaacaacatattcacagttgcggtacaggcatcaaagattccttgagtatcagcatctttgtaaggca |
45355242 |
T |
|
| Q |
326 |
ctggaatcacaatgacttgagtcgatgctactttaggaggtagcaccaatcccttgtcatcaccatgaaccatcaccatcgctccaatctgttaaaaaag |
425 |
Q |
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| |||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||| |
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| T |
45355241 |
caggaatcacaatgacttgaactgatgctactttaggtggcagcaccaatcccttgtcatcaccatgaaccatcaccatcaccccaatctgttgaaaaag |
45355142 |
T |
|
| Q |
426 |
cg |
427 |
Q |
| |
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|| |
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|
| T |
45355141 |
cg |
45355140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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