View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_3 (Length: 421)
Name: NF11602_high_3
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Complemental strand, 6242121 - 6241740
Alignment:
| Q |
16 |
ataattgcaccaatatatgattgaaaatccaatatattttctgaactttgtattgttttgaatatgagattagtaatgtt------aatatatgttactc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||| |
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| T |
6242121 |
ataattgcaccaatatatgattgaaaatccaatatattttctgaactttgtattgttttgaatatgagattatgtatgtttaaaacaatgtatgttactc |
6242022 |
T |
|
| Q |
110 |
tagctacagttttcacaaaattatgtgtgtgatgttttttattctgttgtgaagaatttgggaggccctcttcaattcagaaaatggtaattcctccttt |
209 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6242021 |
tagctacagttttcacaaaatcatgtgtgtgatgttttttattctgttgtgaagaatttgggaggccctcttcaattcagaaaatggtaattcctccttt |
6241922 |
T |
|
| Q |
210 |
ctgcgaaggccaggatgtgattctacaggatccatctggaaccgggatgtcagcaacattctgtattggaattctgaagatgcttgattatgaattggct |
309 |
Q |
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| T |
6241921 |
ctgcaaaggccacgatgtgattctacaggatccatctggaaccgggatgtcagcaacattctgtattggaattctgaagatgcttgattatgaattggct |
6241822 |
T |
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| Q |
310 |
cattgccaggctttggttttggccccaaccaacgagctagctttacagattaagcaggttatgcaagatcttggtcaattcc |
391 |
Q |
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| T |
6241821 |
cattgccaggctttggttttggccccaaccaacgagctagctttacagattaagcaggttatgcaagatcttggtcaattcc |
6241740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 204 - 351
Target Start/End: Complemental strand, 6250859 - 6250712
Alignment:
| Q |
204 |
tcctttctgcgaaggccaggatgtgattctacaggatccatctggaaccgggatgtcagcaacattctgtattggaattctgaagatgcttgattatgaa |
303 |
Q |
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| T |
6250859 |
tcctttctgcaaaggtctggatgtgattcaacaggctcagtctggaactgggaagacagcaacattctgctctggaattttgcagcagcttgattatgga |
6250760 |
T |
|
| Q |
304 |
ttggctcattgccaggctttggttttggccccaaccaacgagctagct |
351 |
Q |
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|| | ||| |||||||| ||||||||||||||||| | ||||||||| |
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| T |
6250759 |
ttagttcagtgccaggccttggttttggccccaacaagggagctagct |
6250712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 6226940 - 6226846
Alignment:
| Q |
96 |
aatatatgttactctagctaca--gttttcacaaaattatgtgtgtgatgtttttt--attctgttgt-gaagaatttgggaggccctcttcaat |
185 |
Q |
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| T |
6226940 |
aatatatgctactcttgctacacagttttcacaaaatcatatgtatgatgttttttttattctgtttccgaaggttttgggaggccctcttcaat |
6226846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 151; Significance: 9e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 115 - 384
Target Start/End: Original strand, 17544382 - 17544651
Alignment:
| Q |
115 |
acagttttcacaaaattatgtgtgtgatgttttttattctgttg-tgaagaatttgggaggccctcttcaattcagaaaatggtaattcctcctttctgc |
213 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||| ||||||| |||||||||| |
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| T |
17544382 |
acagttttcacaaaatca-gtgtgtgatgttttttattctgtttctgaaggttttgggaggccctcttcaatccagcaaagggtaattgctcctttctgt |
17544480 |
T |
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| Q |
214 |
gaaggccaggatgtgattctacaggatccatctggaaccgggatgtcagcaacattctgtattggaattctgaagatgcttgattatgaattggctcatt |
313 |
Q |
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||||| || |||||||||||| ||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
17544481 |
gaaggtttgggtgtgattctacaagatccatatggaactgggatgttagaaacattctgtattggaattctgaagaagcttgattatggattggttcatt |
17544580 |
T |
|
| Q |
314 |
gccaggctttggttttggccccaaccaacgagctagctttacagattaagcaggttatgcaagatcttggt |
384 |
Q |
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| T |
17544581 |
gccaggctttggttttggccccaaccatggagctggttttacagattaaggaggttatgcaagatcttggt |
17544651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 273121 - 272999
Alignment:
| Q |
115 |
acagttttcacaaaattatgtgtgtgatgttttttattctgttg-tgaagaatttgggaggccctcttcaattcagaaaatggtaattcctcctttctgc |
213 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||| |||||||||| |
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| T |
273121 |
acagttttcacaaaatcatgtgtgtaatgttttttattctgtttctgaaggttttgggaggccttcttcaatccagcaaatggtaattgctcctttctgt |
273022 |
T |
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| Q |
214 |
gaaggccaggatgtgattctaca |
236 |
Q |
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||||| |||||||||| |||| |
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| T |
273021 |
gaaggtttggatgtgattttaca |
272999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 875089 - 875211
Alignment:
| Q |
115 |
acagttttcacaaaattatgtgtgtgatgttttttattctgttg-tgaagaatttgggaggccctcttcaattcagaaaatggtaattcctcctttctgc |
213 |
Q |
| |
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|||||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||||||||||| |||||||||| |
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| T |
875089 |
acagttttcacaaaatcatgtatgtaatgttttttattctgtttctgaaggttttgggaggccttcttcaatccagcaaatggtaattgctcctttctgt |
875188 |
T |
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| Q |
214 |
gaaggccaggatgtgattctaca |
236 |
Q |
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||||| |||||||||| |||| |
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| T |
875189 |
gaaggtttggatgtgattttaca |
875211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 338
Target Start/End: Original strand, 42717756 - 42717803
Alignment:
| Q |
291 |
gcttgattatgaattggctcattgccaggctttggttttggccccaac |
338 |
Q |
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||||||||||| |||| ||| |||||||||||||||||||||||||| |
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| T |
42717756 |
gcttgattatggtttggttcagtgccaggctttggttttggccccaac |
42717803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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