View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_4 (Length: 406)
Name: NF11602_high_4
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 9333582 - 9333203
Alignment:
| Q |
1 |
tagaaataatgaacaaataaaacttttatctttagctacaataatctgctacaatttacatacaaacatatat------catccattagaaaatagtgga |
94 |
Q |
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| T |
9333582 |
tagaaataatgaacaaataaaacttttatctttagctacaataatctgctacaatttacatacaaacatatatatatatcatccattagaaaatagtgga |
9333483 |
T |
|
| Q |
95 |
tgaaaacatactataacaccaaaaatatacaagtatgctactacaatttacatacaaactaataataattttctaataaatcttaataaatatattcata |
194 |
Q |
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| T |
9333482 |
tgaaaacatactataacaccaaaaatatataagtatgctac---aatttacatacaaactaataataattttctaataaatcttaataaatgtattcata |
9333386 |
T |
|
| Q |
195 |
gctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtcttctatttccaaattcatcctttcttttaccatgaatt |
294 |
Q |
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| T |
9333385 |
gctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtcttctatttccaaattcatcctttcttttaccatgaatt |
9333286 |
T |
|
| Q |
295 |
cttctcctttataaaatgaatcttccccaatacttaatccagtaacattttcctattattgagaaaagctataataagttaga |
377 |
Q |
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| T |
9333285 |
cttctcctttatcaaatgaatcttccccaatacttaatccagtaacattttcctattattgagaaaagctataataagttaga |
9333203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 158 - 377
Target Start/End: Complemental strand, 9335219 - 9335000
Alignment:
| Q |
158 |
aataattttctaataaatcttaataaatatattcatagctcaaactcttcctggtggattggggtcatggtggttgtttgcacctgtccctggatagtct |
257 |
Q |
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| T |
9335219 |
aataattttctaataaatcataaagaaattatgcatcactcaaactcttcctggtaccttaggatcatggtggttgtttgctcctgtccctggatagtct |
9335120 |
T |
|
| Q |
258 |
tctatttccaaattcatcctttcttttaccatgaattcttctcctttataaaatgaatcttccccaatacttaatccagtaacattttcctattattgag |
357 |
Q |
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|||||||||||||||||||||| ||||||| ||| ||||||| ||||| || ||||||| ||| |||| |||||| ||||| |||||||||||||| |
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| T |
9335119 |
tctatttccaaattcatccttttctttaccaagaactcttctcttttatccaacaaatcttctccattactaaatccaataacactttcctattattgac |
9335020 |
T |
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| Q |
358 |
aaaagctataataagttaga |
377 |
Q |
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| T |
9335019 |
aaaagctatattatgttaga |
9335000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 9335321 - 9335242
Alignment:
| Q |
50 |
tacaatttacatacaaacatatatcatccattagaaaatagtggatgaaaacatactataacaccaaaaatatacaagtat |
130 |
Q |
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|||||| ||||||||||| |||||| |||||| || || || |||||||||||||||||||||||| ||| ||||||||| |
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| T |
9335321 |
tacaatctacatacaaactaatatcacccattaaaatat-gttgatgaaaacatactataacaccaataatgtacaagtat |
9335242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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