View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_5 (Length: 394)
Name: NF11602_high_5
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 141 - 362
Target Start/End: Complemental strand, 3163530 - 3163314
Alignment:
| Q |
141 |
aagtttttgtacattgttatctatatggtcttacattttaaaattttaatggtttcttct-gtgtgattcactttgtttaaaaacagtttaatataacta |
239 |
Q |
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| T |
3163530 |
aagttgttgaacattgttatctat--ggccttacattttaaaattgtattggtttattcttgtgtgattcaaattgttcaaaaacaattcaatataacta |
3163433 |
T |
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| Q |
240 |
ttttcccatgtattttgttgaacacaaatggaaaaacagccactggtttatttcttttgtatctccttactgaaagaagagtgcacattttacagtttca |
339 |
Q |
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| T |
3163432 |
ctttgccatgtattttgttgatcacaaatggaaaaacagccact----ttttttttttgtatctcattactgaaagaagagtgtacattttacagtttca |
3163337 |
T |
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| Q |
340 |
aataataggattagtttcctttg |
362 |
Q |
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| T |
3163336 |
aataagaggattagtttcctttg |
3163314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 3166794 - 3166762
Alignment:
| Q |
84 |
ctgtgctgtatctccaaatagtttatgcattgg |
116 |
Q |
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| T |
3166794 |
ctgtgctgtatctccaaatagtttatgcattgg |
3166762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39392374 - 39392413
Alignment:
| Q |
1 |
atagtgtaatcagttagtgaggattggagcatagcattgc |
40 |
Q |
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| T |
39392374 |
atagtgtaatcagttagtgaggattggagcattgcattgc |
39392413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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