View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11602_high_8 (Length: 363)

Name: NF11602_high_8
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11602_high_8
NF11602_high_8
[»] chr4 (6 HSPs)
chr4 (1-346)||(38176668-38177013)
chr4 (1-94)||(5532804-5532897)
chr4 (4-98)||(5934592-5934686)
chr4 (174-240)||(37088550-37088617)
chr4 (4-98)||(5921132-5921226)
chr4 (16-69)||(37088712-37088764)
[»] chr2 (1 HSPs)
chr2 (1-101)||(11731769-11731869)
[»] chr3 (1 HSPs)
chr3 (4-89)||(53145937-53146022)
[»] chr7 (1 HSPs)
chr7 (1-88)||(34841873-34841960)
[»] chr1 (1 HSPs)
chr1 (4-83)||(45452349-45452428)
[»] chr8 (1 HSPs)
chr8 (4-44)||(40916254-40916294)


Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 38177013 - 38176668
Alignment:
Q  1 gaaatggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaagagtatgaagagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38177013 gaaatggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaagagtatgaagagg 38176914  T
Q  101 acgcagaggagattggtgcttgaggcctctcaatcagttgtcaaagttgtttcaaactgcattatggatgactttgaacgagtttaatttgttgatattc 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176913 acgaagaggagattggtgcttgaggcctctcaatcagttgtcaaagttgtttcaaactgcattatggatgactttgaacgagtttaatttgttgatattc 38176814  T
Q  201 aaagtacattgacttgttcatttgttgtttgtaagaaattaaagtcattgtataagctggtttgtaataatgcttctgttactaaatcattggatgtttt 300  Q
    ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38176813 aaaatacattgacttgttcatgtgttgtttgtaagaaattaaagtcattgtataagctggtttgtaataatgcttctgttactaaatcattggatgtttt 38176714  T
Q  301 actaggtcgatgatttcccgattcaattttttcttttatttgtcca 346  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  38176713 actaggtcgatgatttcccgattcaattttttcttttatttgtcca 38176668  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 5532804 - 5532897
Alignment:
Q  1 gaaatggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaagagtatg 94  Q
    |||||||| ||||||||||| ||||| |||||||||||| |||| || ||||| || || ||||| ||||| || ||||||||||| |||||||    
T  5532804 gaaatggaattcactgaggctgagagcaacatgaatgatctggttgctgagtatcaacagtaccaagatgccaccgctgatgaggatgagtatg 5532897  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 5934686 - 5934592
Alignment:
Q  4 atggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaagagtatgaaga 98  Q
    ||||||||||||||||| ||||| |||||||||||| | ||| |||| || || || || || ||||||||||| || ||||| |||||||||||    
T  5934686 atggagttcactgaggctgagagcaacatgaatgatcttgtgtcagaatatcaacagtatcaagatgctactgcagaggaggatgagtatgaaga 5934592  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 37088617 - 37088550
Alignment:
Q  174 ttgaacgagtttaatttgttga-tattcaaagtacattgacttgttcatttgttgtttgtaagaaatt 240  Q
    |||||||||||||||| ||||| |||||||| |||| |||||||||||| || |||||||| ||||||    
T  37088617 ttgaacgagtttaattcgttgagtattcaaaatacactgacttgttcatgtggtgtttgtatgaaatt 37088550  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 5921226 - 5921132
Alignment:
Q  4 atggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaagagtatgaaga 98  Q
    ||||||||||||||||| ||||| |||||||||||| | ||| | || || || || || || ||||||||||| || ||||| |||||||||||    
T  5921226 atggagttcactgaggctgagagcaacatgaatgatcttgtgtctgaatatcaacagtatcaagatgctactgcagaggaggatgagtatgaaga 5921132  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 37088764 - 37088712
Alignment:
Q  16 gaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggat 69  Q
    ||||| |||||||||||||||||||||||||| |||||||| |||||| |||||    
T  37088764 gaggctgagagtaacatgaatgatttggtggctgagtacca-caatactaggat 37088712  T

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Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 11731869 - 11731769
Alignment:
Q  1 gaaatggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaagagtatgaagagg 100  Q
    |||||||||||||||||||| |||||||||||||||||| | || || ||||||||||||||||||||||| |||||||| || ||||| ||||| ||||    
T  11731869 gaaatggagttcactgaggctgagagtaacatgaatgatcttgttgctgagtaccagcaataccaggatgcaactgctgacgaagaagattatgaggagg 11731770  T
Q  101 a 101  Q
    |    
T  11731769 a 11731769  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 53146022 - 53145937
Alignment:
Q  4 atggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaaga 89  Q
    ||||||||||| ||||| || ||||||||||| |||||||| ||||||||||| |||||||||||||| |  ||||| ||||||||    
T  53146022 atggagttcacggaggcagaaagtaacatgaacgatttggtagcagagtaccaacaataccaggatgcaatagctgaggaggaaga 53145937  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 34841873 - 34841960
Alignment:
Q  1 gaaatggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatgaggaag 88  Q
    |||||||| ||||| || || ||||| |||||||||||  | ||| | ||||||||||| ||||||||||| ||||||||||| ||||    
T  34841873 gaaatggaattcacagaagcagagagcaacatgaatgacctcgtgtctgagtaccagcagtaccaggatgccactgctgatgaagaag 34841960  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 83
Target Start/End: Complemental strand, 45452428 - 45452349
Alignment:
Q  4 atggagttcactgaggccgagagtaacatgaatgatttggtggcagagtaccagcaataccaggatgctactgctgatga 83  Q
    |||||||| ||||| || || || |||||||||||  | ||  ||||||||||||||||||| ||||||||||| |||||    
T  45452428 atggagtttactgaagcagaaagcaacatgaatgaccttgtctcagagtaccagcaataccaagatgctactgcagatga 45452349  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 40916294 - 40916254
Alignment:
Q  4 atggagttcactgaggccgagagtaacatgaatgatttggt 44  Q
    |||||||| |||||||| |||||||| ||||||||||||||    
T  40916294 atggagtttactgaggctgagagtaatatgaatgatttggt 40916254  T

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