View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11602_high_9 (Length: 358)
Name: NF11602_high_9
Description: NF11602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11602_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 35309422 - 35309761
Alignment:
| Q |
1 |
ttacttaaataatttgaatccaatttctctcgtaccgacttaatatg------tgtaatttcttatttgttaatagtatccagcttcatttcacataaga |
94 |
Q |
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| T |
35309422 |
ttacttaaataattcgaatccaatttcactcgtaccgacttaatatgaatatgtgtaatttcttatttgttaatagtatccagcttcatttcacataaga |
35309521 |
T |
|
| Q |
95 |
tgcga--atttgattcactgctattacttaaatttcaactcacatttttcaagcatagaaaaatgttttaaacttttggaatgatttgatttttcacaac |
192 |
Q |
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| T |
35309522 |
tgcgataatttgattcactgctattacttaaatttcaactcacattattcaagcatagaaaaatgttttaaacttttagaatgatttgatttttcacaac |
35309621 |
T |
|
| Q |
193 |
ctattattctcacacctcctaagcacaattctggctataagcagctccacctaatgagttgaatgacatgatggcaacaaagagtgactaaaatttcaag |
292 |
Q |
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| T |
35309622 |
ctattattctcacacctcctaagcacaattctggctataagcagctccacctaatgagttgaatgacatgatggcaacaaagagtgactaaaatttcaag |
35309721 |
T |
|
| Q |
293 |
tatatatgtttataccaatgataggtttagtaggtggtga |
332 |
Q |
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| T |
35309722 |
tatatatgtttataccaatgataggtttagtaggtggtga |
35309761 |
T |
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