View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_high_15 (Length: 392)
Name: NF11603_high_15
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 8457966 - 8457593
Alignment:
| Q |
1 |
ataaagtagtaagaaaataaattacactaaagttcttgatttcaattcttgcgtnnnnnnnngaacattgatacgcatgctaattttcaagtctttgaat |
100 |
Q |
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| T |
8457966 |
ataaagtagtaagaaaataaattacactaaagttcttgatttcaattcttgcgtaaaaaaaagaacattgatatgcatgttaattttcaagtccttgaat |
8457867 |
T |
|
| Q |
101 |
atgtaagaatcaatttggtttagcaacattatctcacgattgatgttttgatgacaacaaaacaaatgaaaaatttgtctactaacgccgtgttcaagcc |
200 |
Q |
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| T |
8457866 |
atgtaagaatcaatttggtttagccacattatctcacgattgatgttttgatgacagcaaaacaaatgaaaaatttatctactaacgccgtgttcaagcc |
8457767 |
T |
|
| Q |
201 |
gtaagaaataagtaataacaaaagagagtcaacaagtgacaaatagtacaatttatacattctatctactatcttctctcttgttctttaatctcattct |
300 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
8457766 |
gtaagaaataagtaataacaaaagagagtcaacaattgacaaatagtacaatttatacattctatctactatcttctctcttgttctttattgtcattct |
8457667 |
T |
|
| Q |
301 |
ttcaacggttgtattctctcaagtataaaagggaaactattcaaatcgtttgaattgttttggatagtttgtcc |
374 |
Q |
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| T |
8457666 |
ttcaacggttgtattctctcaagtataaaagggaaactattcaaatcgtttgaattgtcttggatagtttgtcc |
8457593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 32652123 - 32652169
Alignment:
| Q |
140 |
ttgatgttttgatgacaacaaaacaaatgaaaaatttgtctactaac |
186 |
Q |
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| T |
32652123 |
ttgatgttttgatgataacaaaacaaataaataatttgtctgctaac |
32652169 |
T |
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