View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_high_19 (Length: 346)
Name: NF11603_high_19
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 14009374 - 14009068
Alignment:
| Q |
22 |
agcatagagcatcacgtcaaatttttaacccaacaccttccttgcccaggcagaagctacttgccttcaacttgcccatataaaaataatgtacattgag |
121 |
Q |
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| T |
14009374 |
agcatagagcatcacgtcaaatttttaacccaacaccttccttgcccaggcagaagctacttgccttcaacttgcccatataaaaataatgtacattgag |
14009275 |
T |
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| Q |
122 |
gaaaggatctatatacttattatttttcatttctaccttgtctttcactttacattgattaaggtcctgctgacacaaagataagtataagcatcagttc |
221 |
Q |
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| T |
14009274 |
gaaaggatctatatacttattatttttcatttctaccttgtctttcactttacattgattaaggtcctgctgacacaaagataagtataagcatcagttt |
14009175 |
T |
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| Q |
222 |
taaagaagttaaatattagctgatacaaacaacaatgaaatatgacaatcatcacagctaattcagagttaaaatcatgaatggtttaccaatatgttag |
321 |
Q |
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| T |
14009174 |
taaagaagttaaatattagctgatacaaacaacaatgaaatatgacaatcatcacagc---ttcagcgttaaaatcatgaatggtttaccaatatgttag |
14009078 |
T |
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| Q |
322 |
taatcatgtt |
331 |
Q |
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|||||||||| |
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| T |
14009077 |
taatcatgtt |
14009068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 180 - 331
Target Start/End: Complemental strand, 40910754 - 40910606
Alignment:
| Q |
180 |
ttaaggtcctgctgacacaaagataagtataagcatcagttct-aaagaagttaaatattagctgatacaaacaacaatgaaatatgacaatcatcac-- |
276 |
Q |
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||||||| |||||||||||||||||||||| ||||||||| | ||||||||||||||| | |||||||| |||||||||||||||||||| ||| |
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| T |
40910754 |
ttaaggtactgctgacacaaagataagtatgtgcatcagttgtaaaagaagttaaatatgatctgataca---aacaatgaaatatgacaatccacacaa |
40910658 |
T |
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| Q |
277 |
agctaattcagagttaaaatcatgaatggtttaccaatatgttagtaatcatgtt |
331 |
Q |
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| T |
40910657 |
agc---ctcattggtgaaatcatgaatggtttatcaatatgttagtaatcatgtt |
40910606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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