View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_high_20 (Length: 323)
Name: NF11603_high_20
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 25733940 - 25734236
Alignment:
| Q |
11 |
cagagaaggagatttaaacacaaagttctttcatgcggcagctatctctagaagaaaggttaatcgaattgaacatctcgaaaattcacatggcacagtt |
110 |
Q |
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| T |
25733940 |
cagagaaggagatttaaacacaaagttctttcacgcggcagctacctctagaagaaaggttaatcgaattgaacatctcgaaaattcacatggcacagtt |
25734039 |
T |
|
| Q |
111 |
tgtcgaaaagaggaagaacttctaatagcgcgagataacttctcacatttgttcaccaaactcccaagaaattgtgccgcgattatttcttaagtaccaa |
210 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25734040 |
tgtcgaaaagtggaagaacttctaatagcgcgagataacttctcacatttgttcaccaaactcccaagaaattgtgccgcgattatttcttaagtaccaa |
25734139 |
T |
|
| Q |
211 |
ccgcaattactgaagaagataattattccctcacagtagcttttacaatagatgaattccgctcagccgttttctccatgcaagctcacaagtgttc |
307 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25734140 |
ccgcaattattgaagaagataattattccctcacagtagcttttacaatagatgaattccgctcggccgttttctccatgcaagctcacaagtgttc |
25734236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 30471683 - 30471567
Alignment:
| Q |
14 |
agaaggagatttaaacacaaagttctttcatgcggcagctatctctagaagaaaggttaatcgaattgaacatctcgaaaattcacatggcacagtttgt |
113 |
Q |
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|||||| |||||||| || |||||||| ||||| ||||||| ||| | ||||| || || || |||||||| |||||||||||| ||||||| |||||| |
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| T |
30471683 |
agaaggggatttaaataccaagttcttccatgcagcagctacctcacgcagaaaagtgaaccgcattgaacacctcgaaaattcaaatggcaccgtttgt |
30471584 |
T |
|
| Q |
114 |
cgaaaagaggaagaact |
130 |
Q |
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| T |
30471583 |
cgaaaagaggatgaact |
30471567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 245
Target Start/End: Original strand, 20861196 - 20861354
Alignment:
| Q |
90 |
gaaaattcacatggcacagtttgtcgaaaagaggaagaacttc---taatagcgcgagataacttctcacatttgttcaccaaactcccaagaaattgtg |
186 |
Q |
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||||| ||| |||||||||||||||||||||| |||||||||| |||| |||||| | ||||||| ||||||||||| || |||||||| | || |
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| T |
20861196 |
gaaaactcaaatggcacagtttgtcgaaaagaagaagaacttcaagtaattgcgcgatactacttctcgcatttgttcactaagctcccaagcacccatg |
20861295 |
T |
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| Q |
187 |
ccgcgattatttcttaagtaccaaccgcaattactgaagaagataattattccctcaca |
245 |
Q |
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| | |||| ||| ||||||||||| |||||||||||||| |||| |||||||||||| |
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| T |
20861296 |
caacagttatctctaaagtaccaaccacaattactgaagaatataactattccctcaca |
20861354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 45277287 - 45277171
Alignment:
| Q |
14 |
agaaggagatttaaacacaaagttctttcatgcggcagctatctctagaagaaaggttaatcgaattgaacatctcgaaaattcacatggcacagtttgt |
113 |
Q |
| |
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|||||| |||||||| || |||||||| ||||| ||||||| ||| | ||||| || || || |||||||| |||||||||||| ||||||| |||||| |
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| T |
45277287 |
agaaggggatttaaataccaagttcttccatgcagcagctacctcacgcagaaaagtgaaccgcattgaacacctcgaaaattcaaatggcaccgtttgt |
45277188 |
T |
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| Q |
114 |
cgaaaagaggaagaact |
130 |
Q |
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||||||||||| ||||| |
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| T |
45277187 |
cgaaaagaggatgaact |
45277171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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