View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_high_28 (Length: 249)
Name: NF11603_high_28
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 8022925 - 8023153
Alignment:
| Q |
1 |
tgttatcagtcaagcaaatcctataacaaccttgcggtgaccacgctgtccacattacaatgccctgaatcccagggtgagaatgtgcctctctaagaac |
100 |
Q |
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| T |
8022925 |
tgttatcagtcaagcaaatcctataacaaccttgcggtgaccacgctgtccacattacaatgccctgaatcccagggtgagaatgtgcctctctaagaac |
8023024 |
T |
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| Q |
101 |
ctgctcgaagtacaatgcctacacaaatcataagtgggaaacttaaattagtttaagagtttaatttatatatactgtcagacagtcggtgtaatttttc |
200 |
Q |
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| T |
8023025 |
ctgctcgaagtacaacgcctacacaaatcataagtaggaaacttaaattagtt----------atttatatatactgtcagacagtcggtgtaatttttc |
8023114 |
T |
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| Q |
201 |
tttacctgattaggttggcttgcgacgtctaattctgtg |
239 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |
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| T |
8023115 |
tttacctgattaggttggctcgcgacgtctaattctgtg |
8023153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 21543105 - 21543254
Alignment:
| Q |
1 |
tgttatcagtcaagcaaatcctataacaaccttgcggtgaccacgctgtccacattacaatgccctgaatcccagggtgagaatgtgcctctctaagaac |
100 |
Q |
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| T |
21543105 |
tgttatctgtcaagcacattctaaaacaaccttgtggcgaccatgctgtccacattacaatgcctcgaatccctgggtgagagtgtgcctctctaagaac |
21543204 |
T |
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| Q |
101 |
ctgctcgaagtacaatgcctacacaaatcataagtgggaaacttaaatta |
150 |
Q |
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| T |
21543205 |
ttgctctaagtaccctgcctacacaaatcattagtggaaaacctaaatta |
21543254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28153792 - 28153681
Alignment:
| Q |
1 |
tgttatcagtcaagcaaatcctataacaaccttgcggtgaccacgctgtccacattacaatgccctgaatcccagggtgagaatgtgcctctctaagaac |
100 |
Q |
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||||||| ||||| || ||| |||| ||||| ||||||| ||| ||||||||||||||||| || |||| ||| |||||||| ||||||||||||||| | |
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| T |
28153792 |
tgttatctgtcaaacacatcttatagcaaccctgcggtgtccatgctgtccacattacaataccttgaacccctgggtgagagtgtgcctctctaagagc |
28153693 |
T |
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| Q |
101 |
ctgctcgaagta |
112 |
Q |
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| T |
28153692 |
ttgctccaagta |
28153681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 238
Target Start/End: Complemental strand, 28153565 - 28153529
Alignment:
| Q |
202 |
ttacctgattaggttggcttgcgacgtctaattctgt |
238 |
Q |
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| T |
28153565 |
ttacctgattaggttggcttgcaacatctaattctgt |
28153529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 113
Target Start/End: Complemental strand, 1365478 - 1365402
Alignment:
| Q |
37 |
gtgaccacgctgtccacattacaatgccctgaatcccagggtgagaatgtgcctctctaagaacctgctcgaagtac |
113 |
Q |
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||||||| | |||||||||||||||||||||||||| ||| ||| ||||| ||||||||||||||||| |||||| |
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| T |
1365478 |
gtgaccatgttgtccacattacaatgccctgaatccttgggcgagtgtgtgcttctctaagaacctgctccaagtac |
1365402 |
T |
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