View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_high_7 (Length: 453)
Name: NF11603_high_7
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 30407386 - 30407814
Alignment:
| Q |
18 |
tgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttccttcacctcctgtttaggccttaagaatcctgtatccatatccctc |
117 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407386 |
tgaggtacttgcatgatcaagagaaggtgcacatgcagcatatgaagattcttccttcacctcctgtttaggccttaagaatcctgtatccatatccctc |
30407485 |
T |
|
| Q |
118 |
aactgctgtcctgaaagataagactgaatagaactcataggtcttgcatagttaaaattaattccagctagagcataatttccagacgagggaagattca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407486 |
aactgctgtcctgaaagataagactgaatagaactcataggtcttgcatagttaaaattaattccagctagagcataatttccagacgagggaagattca |
30407585 |
T |
|
| Q |
218 |
gcggtagcggcatttgaaattcagggaacattgaagcaataggtcctgtttgaggcacagcaacatggtcagggctcgttccataggcgccataaggtat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407586 |
gcggtagcggcatttgaaattcagggaacattgaagcaataggtcctgtttgaggcacagcaacatggtcagggctcgttccataggcgccataaggtat |
30407685 |
T |
|
| Q |
318 |
gatattattcaaggaagagtaattcatttgagatatggaggaaggtccaaacttcatatcattactgaaatttcccatcaaacttggtctcaggaaatca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30407686 |
gatattattcaaggaagagtaattcatttgagatatggaggaaggtccaaacttcatatcattactgaaatttcccatcaaacttgatctcaggaaatca |
30407785 |
T |
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| Q |
418 |
ttgctaaaatcaggttttctatcgaaatg |
446 |
Q |
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|||||||| |||||||||||||||||||| |
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| T |
30407786 |
ttgctaaattcaggttttctatcgaaatg |
30407814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 30393792 - 30394220
Alignment:
| Q |
18 |
tgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttccttcacctcctgtttaggccttaagaatcctgtatccatatccctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||| | ||||||||| |||||||||||||||| |
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| T |
30393792 |
tgaggtacttgcatgatcaagagagggtgcacatgcagcatatgaagattcttcattcagcgcctgtttgccctttaagaatcttgtatccatatccctc |
30393891 |
T |
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| Q |
118 |
aactgctgtcctgaaagataagactgaatagaactcataggtcttgcatagttaaaattaattccagctagagcataatttccagacgagggaagattca |
217 |
Q |
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|||||||| |||||||| |||||||| |||||| | |||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30393892 |
aactgctgccctgaaaggtaagactggatagaatttataggtttttcatagttaaaattaattccagctagagaataatttccagacgagggaagattca |
30393991 |
T |
|
| Q |
218 |
gcggtagcggcatttgaaattcagggaacattgaagcaataggtcctgtttgaggcacagcaacatggtcagggctcgttccataggcgccataaggtat |
317 |
Q |
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||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
30393992 |
gcggtggtggcatttgaaattcaggaaacattgaagcaataggtcctgtttgaggcacagcaacatggtcagggatcgctccataggcgccataaggtac |
30394091 |
T |
|
| Q |
318 |
gatattattcaaggaagagtaattcatttgagatatggaggaaggtccaaacttcatatcattactgaaatttcccatcaaacttggtctcaggaaatca |
417 |
Q |
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||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
30394092 |
gatgttattcaaagaagagtaattcatttgagatgaggaggaagctccaaacttcatatcattactgaaacttcccatcaaacttgacctcatgaaatca |
30394191 |
T |
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| Q |
418 |
ttgctaaaatcaggttttctatcgaaatg |
446 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |
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| T |
30394192 |
ttgccaaaatcaggttttctatcaaaatg |
30394220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 30393738 - 30393781
Alignment:
| Q |
18 |
tgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393738 |
tgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
30393781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 30407332 - 30407375
Alignment:
| Q |
18 |
tgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
61 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30407332 |
tgaggtacttgcatgatcaagagagggtgcacatgcagcatatg |
30407375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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