View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_10 (Length: 433)
Name: NF11603_low_10
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 26846260 - 26846663
Alignment:
| Q |
18 |
acattccttctctatttcttactactttcaacagggttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaactgcaacacaactgc |
117 |
Q |
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| T |
26846260 |
acattccttctctatttcttactactttcaacagggttttatcttaaaaacaagttgcagcatcaaagttttgatgtatgtgtaactgcaacacaactgc |
26846359 |
T |
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| Q |
118 |
agttgaggcagtatcagccttctttgactgattttcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatc |
217 |
Q |
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| T |
26846360 |
agttgaggcagtatcagccttctttgactgattttcaacaatatcaatatcacacgagcacgatttaaaacttgtttatcaataaaataggatgaagatc |
26846459 |
T |
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| Q |
218 |
atagcctatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagaccgagcaatataggaaataacatttttattgcaggagaggcgtg |
317 |
Q |
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| T |
26846460 |
atagcttatatgatccaaaaatatggtcatatttgtttaatgtttaaaataaaagactgagcaatataggaaataacatttttattgcaggagaggcgtg |
26846559 |
T |
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| Q |
318 |
catatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacagcaggtttct |
417 |
Q |
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| T |
26846560 |
catatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatgaaatcaacaaacttaccaagcaacacaacaggtttct |
26846659 |
T |
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| Q |
418 |
tctc |
421 |
Q |
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|||| |
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| T |
26846660 |
tctc |
26846663 |
T |
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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 54881118 - 54881202
Alignment:
| Q |
296 |
tttttattgcaggagaggcgtgcatatctattttgcaaagaagacagagcaatactttgcagggaatgtgacattcctatccatg |
380 |
Q |
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| T |
54881118 |
tttttgttgcaggagaggcgtggatatctattttgccaagaagatagagcgattctatgcagagaatgtgaccttccaatccatg |
54881202 |
T |
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