View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_11 (Length: 431)
Name: NF11603_low_11
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 37259 - 36860
Alignment:
| Q |
14 |
atgaatatgtgcaagtgcaagcagatgcataccaacttttactaccattttaactagacaaaagatgcaaataaagcaatgtgtgtcataactatatgca |
113 |
Q |
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| T |
37259 |
atgaatatgtgcaagtgcaagcagatgcataccaagttttactaccattttaactagacaaaagatgcaaataaagaaatgtgtgtcataactatatgca |
37160 |
T |
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| Q |
114 |
ctcatttcatcaaattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctc |
213 |
Q |
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| T |
37159 |
ctcatttcatcaaattttatcatcatggcttaattcttgatcttcaccaaattcaacatcttgcaaagaaatcttgtctattccacctgtcaataatctc |
37060 |
T |
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| Q |
214 |
atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgccaataa |
313 |
Q |
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| T |
37059 |
atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgccaataa |
36960 |
T |
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| Q |
314 |
ctgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaacgttagaacacatactgttttcatgtggcctaaaac |
413 |
Q |
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| T |
36959 |
ctgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaacgttagaacacatactgttttcatgtggcctaaaac |
36860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 214 - 413
Target Start/End: Original strand, 8675265 - 8675464
Alignment:
| Q |
214 |
atttcttcttcagttaggctgttttttgcatgatgaaaggtcttttcatttgactttttctcagcctccgccgcccaactgtaaattatcatgccaataa |
313 |
Q |
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| T |
8675265 |
atttcttcttctgttaggctgtttttcgaatgagggagagtctttgcatttggctgcttttcaagctccacagcccaactataaattaccatgccgacaa |
8675364 |
T |
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| Q |
314 |
ctgcgacacccattcccatgatattcttaaaatttagctctgaatcaaatagcaaccatcccaacgttagaacacatactgttttcatgtggcctaaaac |
413 |
Q |
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| T |
8675365 |
ctgcaagaaccattcccatgatgttcttgaaagtgagctctgaatcgaataacagccaccccaaagtcagaacacataatgttttcatgtggcctaaaac |
8675464 |
T |
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