View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_12 (Length: 418)
Name: NF11603_low_12
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 121 - 405
Target Start/End: Original strand, 8022563 - 8022854
Alignment:
| Q |
121 |
cctaaatcgagtaatgatagaaaaataaaaggctttaacaacagccaaattttgatagaaaaatcaacgacct-----ttccattataagcaacnnnnnn |
215 |
Q |
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| T |
8022563 |
cctaaatcgagtaatgatagaaaaataaaaggctttaacaacagccaaattttgatagaaaaatcaacgacctctaatttccattataagcaacaaaaat |
8022662 |
T |
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| Q |
216 |
nnn--ttaacaagaaacaaaaaactaaatagaaagttgtataaattgttttgttttcttgaactcatcttttgaaagaacctttatatgatgagtgaaat |
313 |
Q |
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| T |
8022663 |
aaaatttaacaagaaacaaaaaactaaatagaaagttgtataaactgttttgttttcttgaactcatcttttgaaagaacctttatatgatgagtgaaat |
8022762 |
T |
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| Q |
314 |
tattcttcttcttgatggggtgattgatttctatttcgtagtcgccgtggaaaagggaggcctcaaagtatccattttggtctgtagtccct |
405 |
Q |
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| T |
8022763 |
tactcttcttcttgatggggtgattgatttctatttcgtagtcgccgtgaaaaagggaggcctcaaagtatccattttggtctgtcgtccct |
8022854 |
T |
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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 8022456 - 8022512
Alignment:
| Q |
18 |
ataaatagaacatgttttgattgaagagcagaatgtggtgatgcaattacaaaaata |
74 |
Q |
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| T |
8022456 |
ataaataaaacatgttttgattgaagagcggaatgtggtgatgcaattacaaaaata |
8022512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 225 - 405
Target Start/End: Original strand, 21542854 - 21543034
Alignment:
| Q |
225 |
agaaacaaaaaactaaatagaaagttgtataaattgttttgttttcttgaactcatcttttgaaagaacctttatatgatgagtgaaattattcttcttc |
324 |
Q |
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| T |
21542854 |
agaagcaaataactaaatagaaatttgtataaattgggttgttttcttggacttgtcttttgaaagcacttgtaactgatgagtgaaagtataattcttc |
21542953 |
T |
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| Q |
325 |
ttgatggggtgattgatttctatttcgtagtcgccgtggaaaagggaggcctcaaagtatccattttggtctgtagtccct |
405 |
Q |
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| T |
21542954 |
tttgcagagtgactaatttccattttgtagtcgccgtgaaaaagggaggccttaaggaacccatttttgtctgttgtccct |
21543034 |
T |
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