View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_14 (Length: 404)
Name: NF11603_low_14
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 37416459 - 37416840
Alignment:
| Q |
4 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatctttctgttaatgatgcag |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37416459 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcagaggggactgtctcatccactcatatctttctgttaacgatgcag |
37416558 |
T |
|
| Q |
104 |
ctaccgtgtcgtcatagaaactagtannnnnnnccgttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaacgagcatttacagat |
203 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
37416559 |
ctaccgtgtcgtcatagaaactagtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaacaagcatttactgat |
37416658 |
T |
|
| Q |
204 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416659 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
37416758 |
T |
|
| Q |
304 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacc |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37416759 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacc |
37416840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 4 - 385
Target Start/End: Original strand, 37423991 - 37424372
Alignment:
| Q |
4 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcaaaggggactgtctcatccactcatatctttctgttaatgatgcag |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37423991 |
taatagtcaaacaaaaaatcaagtttgcaagagctgtgtattatttgtttcctcataggggactgtctcatccactcatatctttctgttaacgatgcag |
37424090 |
T |
|
| Q |
104 |
ctaccgtgtcgtcatagaaactagtannnnnnnccgttctttaagaatgctaaaagcatcttctgacatgaatgtgcaagagtaacgagcatttacagat |
203 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
37424091 |
ctaccgtgtcgtcatagaaactagtatttttttcagttctttaagaatgctaaaggcatcttctgacatgaatgtgcaagagtaacaagcatttactgat |
37424190 |
T |
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| Q |
204 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424191 |
attccaatgttcccaagtgttctagcatgtcatgagtcagctaataaatttgcaaatggtgtgtgaagagcatctatagaatggaagcaagtgtagaaac |
37424290 |
T |
|
| Q |
304 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacc |
385 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37424291 |
aaccaactttattgtctctacataaccaattttgaaagtacaatccaatgtccacaaggcatttttcaaattcagttatacc |
37424372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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