View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_15 (Length: 398)
Name: NF11603_low_15
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 211 - 387
Target Start/End: Original strand, 35823047 - 35823218
Alignment:
| Q |
211 |
ttataattataggatcaaatttaggagttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgat |
310 |
Q |
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| T |
35823047 |
ttataattataggatcaaatttagaagttaggaagatgctagctttcattccactactggtatgcccttgtgaccatcacgtggacagtccctacatgat |
35823146 |
T |
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| Q |
311 |
tcaatttcaattttccctttcttattattaagatgtcaggcttagcttagcttgcacaaagtgcttctccagttcat |
387 |
Q |
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| T |
35823147 |
tcaatttcaattttccctttcttattattaagatgtcag-----gcttagcttgcacaaagtgcttctccagttcat |
35823218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 75 - 214
Target Start/End: Original strand, 35822720 - 35822859
Alignment:
| Q |
75 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttgatgttctttttg |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35822720 |
taaggaatgtccacttcaatttaaacttgtgataatattgtagataaatgcgacttttgatatcgacttcaattaatattaaagtttggtgttctttttg |
35822819 |
T |
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| Q |
175 |
tattttccacatgacatcacttcacttcaactttatttat |
214 |
Q |
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| T |
35822820 |
tattttccacatgacatcacttcacttcaactttatttat |
35822859 |
T |
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