View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_17 (Length: 376)
Name: NF11603_low_17
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_17 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 12 - 376
Target Start/End: Original strand, 32376051 - 32376415
Alignment:
| Q |
12 |
agacaagacaaatgaactagaccaagttccatagtaaatcaaatgatgaaacaaatcatcttggaccatcctcaaaagtttagggtgattccctatctta |
111 |
Q |
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| T |
32376051 |
agacaagacaaatgaactagaccaagttccatagtaaatcaaatgatgaaacaaatcatcttggaccatcctcaaaagtttagggtgattccctatctta |
32376150 |
T |
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| Q |
112 |
tcaccactcaattcaatagctgagttaatcaaaaccaaagcaaaaatctgaacatcttcatcagctgtatgagtagttgatccatctgcctcaactacag |
211 |
Q |
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| T |
32376151 |
tcaccactcaattcaatagctgagttaatcaaaaccaaagcaaaaatctgaacatcttcatcagctgtatgagtagttgatccatctgcctcaactacag |
32376250 |
T |
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| Q |
212 |
aaacaacattcaacaaagaacagagaaaatgaaatatatcaatcgcggcacgaacgccataaccggatttcaaacccgttttatcatcgacatcttctac |
311 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
32376251 |
aaacaacattcaacaaagaacacagaaaatgaaatatatcaattgcggcacgaacaccataaccggatttcaaacccgcgttatcatcaacatcttctac |
32376350 |
T |
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| Q |
312 |
gtctgattcagagtctccttccctctcattcccttcaatttcgggtaaccttgaatatactgctt |
376 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||| |||||||||| ||||||||||| |
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| T |
32376351 |
gtctgattcagaatctccttccctatcattcccttcaatttcaggtaaccttgcatatactgctt |
32376415 |
T |
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