View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_18 (Length: 372)
Name: NF11603_low_18
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 353
Target Start/End: Original strand, 19505047 - 19505404
Alignment:
| Q |
1 |
atgtagaggattcttgagccaaagaagtattggaccttgtgagtgtcca------ccttatgtccaattcagaacacataatatataatatttgatacat |
94 |
Q |
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| T |
19505047 |
atgtagaggattcttgagccaaagaagtattggacctcttgagtgtccaacttgaccttatggccaattcagaacatgtaatatataatatatg---cat |
19505143 |
T |
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| Q |
95 |
cgataacatagattacacggnnnnnnnttgtgtggttggtttaaatttaaggtaaaaagcatatggatgt--gggggtttagtgcctctttcttttattt |
192 |
Q |
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| T |
19505144 |
cgataacatagattacaccaaaaaaatatgtgtggttgttttaaatttaaggtaaaaaacatatggatatatggggaattagtgcctctttcttttattt |
19505243 |
T |
|
| Q |
193 |
tccattttctcatcttttaaacaaattattagtgtttcaaatttcttgattgtaaaatttggatatctaacttatatataagttggaccatttttaacaa |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19505244 |
tccattttctcatcttttaaacaaattattagtgtttcaaatttcttgattgtaaaatttggatatctaacttatatataagttggaccatttttaacaa |
19505343 |
T |
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| Q |
293 |
tggagatgtttcttatatttttcccgatttctatccacgttttagtgtctcaagtattatg |
353 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
19505344 |
tggagatgtttcttatatttttccctatttctatccacgttttagtgtctcaagtattatg |
19505404 |
T |
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