View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_19 (Length: 354)
Name: NF11603_low_19
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_19 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 19 - 354
Target Start/End: Complemental strand, 26358265 - 26357934
Alignment:
| Q |
19 |
attagtgcccagctcttgctgttgagagaaagatgttgtttgaacctgttaaggttaatcaatttttgaatggtaaattagtaataatgaacattaaaat |
118 |
Q |
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| T |
26358265 |
attagcgcccggctcttgctgttgaga--aagatgttgtttgaacctgttaaggttaatcaatttttgaatggtaaattagtaatgatgaacattaaaat |
26358168 |
T |
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| Q |
119 |
tgaatctgttaattttaatcacaaggcactcgaaaaacaaaaataaggggaattggctgcgagtttatgtgttgtcaaaaatcattattgtcatcaacgt |
218 |
Q |
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| T |
26358167 |
tgaatctgttaattttaatcacaaggcacttgaaaaacaaaaataaggggaattggctgcgagtttatgtgttgtccaaaatcattattgtcatcaatgt |
26358068 |
T |
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| Q |
219 |
tgatttctgttctgatcaaattccgatagcgacaccagagtctagagtagctgaatttggtgattaagcttatatttgaaccctattaaacatgaaattg |
318 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26358067 |
tgattcctgttctgatcaaattccgatagcgaca-cagagtctagagtagctgaattaggtgattaagc-tatatttgaaccctattaaacatgaaattg |
26357970 |
T |
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| Q |
319 |
aaactatatttcagttatgttagaacctattttgct |
354 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26357969 |
aaactatatttcagttatgttagaacctattttgct |
26357934 |
T |
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