View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11603_low_2 (Length: 611)

Name: NF11603_low_2
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11603_low_2
NF11603_low_2
[»] chr5 (6 HSPs)
chr5 (99-389)||(13457448-13457738)
chr5 (452-598)||(13457801-13457947)
chr5 (17-104)||(13456505-13456592)
chr5 (455-585)||(31233475-31233604)
chr5 (316-375)||(31233686-31233745)
chr5 (331-389)||(17532542-17532601)
[»] chr3 (3 HSPs)
chr3 (175-373)||(33330404-33330589)
chr3 (455-573)||(23233750-23233869)
chr3 (470-585)||(33330644-33330756)
[»] chr2 (1 HSPs)
chr2 (455-584)||(24453898-24454026)
[»] chr8 (2 HSPs)
chr8 (214-338)||(32149694-32149818)
chr8 (99-180)||(22853350-22853430)
[»] chr7 (5 HSPs)
chr7 (100-161)||(20149110-20149171)
chr7 (99-180)||(17160776-17160857)
chr7 (331-389)||(14806112-14806171)
chr7 (331-389)||(15253106-15253165)
chr7 (342-388)||(2599569-2599615)
[»] chr6 (2 HSPs)
chr6 (455-585)||(27174346-27174475)
chr6 (455-585)||(27231151-27231280)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 99 - 389
Target Start/End: Original strand, 13457448 - 13457738
Alignment:
Q  99 ctacacaccataatggacttaaaactctcattaataggttctaaaaagtttctactcattaatgtgctaaaacatcgaataagcaatgagatcttggtga 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  13457448 ctacacaccataatggacttaaaactctcattaataggttctaaaaagtttctactcattaatgtgctaaaacatcgaataagcaatgagatcttgatga 13457547  T
Q  199 aagagttcaaagttgatgatcaaggggttgatgtgttaacaaaggctttaccaaaagcaagatttgatatattgaaagacaagctgggactttgcagcaa 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13457548 aagagttcaaagttgatgatcaaggggttgatgtgttaacaaaggctttaccaaaagcaagatttgatatattgaaagacaagctgggactttgcagcaa 13457647  T
Q  299 ctaaggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagttttttatagacattagtga 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13457648 ctaaggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagttttttatagacattagtga 13457738  T

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Target: chr5; HSP #2
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 452 - 598
Target Start/End: Original strand, 13457801 - 13457947
Alignment:
Q  452 cgatatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataat 551  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13457801 cgatatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtcttccaatatatcatttccataat 13457900  T
Q  552 actttttctctcgtatcccttttaaaaccaacaattctacctatgct 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  13457901 actttttctctcgtatcccttttaaaaccaacaattctacctatgct 13457947  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 13456505 - 13456592
Alignment:
Q  17 aaattgttaatgaactaatgaattattttgatttatttatctattaacatccaaatcaatttaatccatccattttctcaccctacac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13456505 aaattgttaatgaactaatgaattattttgatttatttatctattaacatccaaatcaatttaatccatccattttctcaccctacac 13456592  T

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Target: chr5; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 455 - 585
Target Start/End: Complemental strand, 31233604 - 31233475
Alignment:
Q  455 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 554  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||   |||||||||||| |||||   |    
T  31233604 tatgtttcagctctatttataaagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttttgtctacaaatatatcattttcataaattt 31233505  T
Q  555 ttttctctcgtatcccttttaaaaccaacaa 585  Q
    ||||||||| |||||| ||||||||||||||    
T  31233504 ttttctctcatatccc-tttaaaaccaacaa 31233475  T

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Target: chr5; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 31233745 - 31233686
Alignment:
Q  316 tttgtagaaattgacttagtattccttagtattttcagttatgatattattaagtttttt 375  Q
    ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  31233745 tttgtagaaattgccttagtattctttagtatttgcagttatgatattattaagtttttt 31233686  T

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Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 17532542 - 17532601
Alignment:
Q  331 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 389  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  17532542 ttagtatgccttagtattttcagttatgatattaataagttttttatgagacattagtga 17532601  T

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Target: chr3 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 175 - 373
Target Start/End: Original strand, 33330404 - 33330589
Alignment:
Q  175 gaataagcaatgagatcttggtgaaagagttcaaagttgatgatcaaggggttgatgtgttaacaaaggctttaccaaaagcaagatttgatatattgaa 274  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||    
T  33330404 gaataagcaataagatcttggtgaaagagttcaaagctgatgatcaaggggtcgatgtgttaacaaaggctttaccaaaagcaagatttgaaatattaaa 33330503  T
Q  275 agacaagctgggactttgcagcaactaaggcacggaggagatttgtagaaattgacttagtattccttagtattttcagttatgatattattaagtttt 373  Q
    | |||||  ||||||||| || || |||||||   ||||| |||||||||| ||          |||||||||||||||||||||||||| ||||||||    
T  33330504 aaacaagtcgggactttgaagaaagtaaggca---aggagctttgtagaaactg----------ccttagtattttcagttatgatattaataagtttt 33330589  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 455 - 573
Target Start/End: Complemental strand, 23233869 - 23233750
Alignment:
Q  455 tatgtttcagctctatttatagagcactgaagtgtt-tgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatac 553  Q
    |||||||||||||||||||||| ||||| |||| || |||||||||||| |||||||||||||| ||||||||||||  |||||||||||||||||||||    
T  23233869 tatgtttcagctctatttatagggcactaaagtattgtgtaatggtgtgtttgatgttataaacttatttctgtcttctaatatatcatttccataatac 23233770  T
Q  554 tttttctctcgtatcccttt 573  Q
    |||||||||| |||||||||    
T  23233769 tttttctctcatatcccttt 23233750  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 470 - 585
Target Start/End: Original strand, 33330644 - 33330756
Alignment:
Q  470 tttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatactttttctctcgtatcc 569  Q
    |||| |||||| |||||||||||||| | || | ||||||||||||||||||||||||||| | |||| ||||||||||| ||| ||||||||| |||||    
T  33330644 tttacagagcagtgaagtgtttgtaaggatgagtttgatgttataaacatatttctgtcttccgatatgtcatttccatattac-ttttctctcatatcc 33330742  T
Q  570 cttttaaaaccaacaa 585  Q
      ||||||||||||||    
T  33330743 --tttaaaaccaacaa 33330756  T

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Target: chr2 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 455 - 584
Target Start/End: Original strand, 24453898 - 24454026
Alignment:
Q  455 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 554  Q
    ||||||| |||||||||||||||| |||||| | ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24453898 tatgttttagctctatttatagagtactgaactatttgtaatggtatgtttgatgttataaacatatttctgtctttcaatataacatttccataatact 24453997  T
Q  555 ttttctctcgtatcccttttaaaaccaaca 584  Q
    ||||||||| |||||| | |||||||||||    
T  24453998 ttttctctcctatccc-tataaaaccaaca 24454026  T

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Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 214 - 338
Target Start/End: Original strand, 32149694 - 32149818
Alignment:
Q  214 atgatcaaggggttgatgtgttaacaaaggctttaccaaaagcaagatttgatatattgaaagacaagctgggactttgcagcaactaaggcacggagga 313  Q
    ||||||||| ||||| |||||||||||||||||||  |||||| |||||||| ||||| |||||||| ||||| || |||||||||||||||| ||||||    
T  32149694 atgatcaagcggttgctgtgttaacaaaggctttaataaaagcgagatttgaaatattaaaagacaatctgggtctctgcagcaactaaggcaaggagga 32149793  T
Q  314 gatttgtagaaattgacttagtatt 338  Q
    ||||||||||||||| |||||||||    
T  32149794 gatttgtagaaattgccttagtatt 32149818  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 22853430 - 22853350
Alignment:
Q  99 ctacacaccataatggacttaaaactctcattaataggttctaaaaagtttctactcattaatgtgctaaaacatcgaataa 180  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||| |||||||    
T  22853430 ctacacaccataatggacttaaaactctcattaataggttctaaaaagttt-tactcattaatccgctaaaacaccgaataa 22853350  T

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Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 20149110 - 20149171
Alignment:
Q  100 tacacaccataatggacttaaaactctcattaataggttctaaaaagtttctactcattaat 161  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  20149110 tacacaccacaatgggcttaaaactctcattaataggttctaaaaagtttctacttattaat 20149171  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 17160857 - 17160776
Alignment:
Q  99 ctacacaccataatggacttaaaactctcattaataggttctaaaaagtttctactcattaatgtgctaaaacatcgaataa 180  Q
    |||||||||||||||||||||||||||| |||||||  ||||||| |||| ||||||||||||   |||||||| |||||||    
T  17160857 ctacacaccataatggacttaaaactcttattaataaattctaaagagttactactcattaatccactaaaacaccgaataa 17160776  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 14806171 - 14806112
Alignment:
Q  331 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 389  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  14806171 ttagtatgccttagtattttcagttatgatactaataagttttttatgagacattagtga 14806112  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 389
Target Start/End: Complemental strand, 15253165 - 15253106
Alignment:
Q  331 ttagtattccttagtattttcagttatgatattattaagttttttat-agacattagtga 389  Q
    ||||||| ||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  15253165 ttagtatgccttagtattttcagttatgatactaataagttttttatgagacattagtga 15253106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 388
Target Start/End: Original strand, 2599569 - 2599615
Alignment:
Q  342 tagtattttcagttatgatattattaagttttttatagacattagtg 388  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||    
T  2599569 tagtattttcagttatgatattattatgtttttaagagacattagtg 2599615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 585
Target Start/End: Original strand, 27174346 - 27174475
Alignment:
Q  455 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 554  Q
    ||||||| ||||||||||||| |||| ||||||||||||||  ||| |||||||||||| || |||||| ||| ||  ||||  ||||||||||| ||||    
T  27174346 tatgtttgagctctatttatatagcagtgaagtgtttgtaagagtgagcttgatgttatcaaaatatttttgttttctaatacgtcatttccatattact 27174445  T
Q  555 ttttctctcgtatcccttttaaaaccaacaa 585  Q
     |||||||| |||| | || |||||||||||    
T  27174446 atttctctcatatctc-ttcaaaaccaacaa 27174475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 455 - 585
Target Start/End: Original strand, 27231151 - 27231280
Alignment:
Q  455 tatgtttcagctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtctttcaatatatcatttccataatact 554  Q
    ||||||| ||||||||||||| |||| ||||||||||||||  ||| |||||||||||| || |||||| ||| ||  ||||  ||||||||||| ||||    
T  27231151 tatgtttgagctctatttatatagcagtgaagtgtttgtaagagtgagcttgatgttatcaaaatatttttgttttctaatacgtcatttccatattact 27231250  T
Q  555 ttttctctcgtatcccttttaaaaccaacaa 585  Q
     |||||||| |||| | || |||||||||||    
T  27231251 atttctctcatatctc-ttcaaaaccaacaa 27231280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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