View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_23 (Length: 302)
Name: NF11603_low_23
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 29711601 - 29711321
Alignment:
| Q |
1 |
atcaaaatcccattctcatttcattaatcaaagaccaaatcagtcagagtaatacatactttgccaaactagttggaaaaacaggtataataacaatttc |
100 |
Q |
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| T |
29711601 |
atcaaaatcccattctcatttcattaatcaaagaccaaataagtcacagtaatacatactttgccaaa----ttggaaaaacgggtataataacaatttc |
29711506 |
T |
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| Q |
101 |
acacaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcacaaacatctgagaaa |
200 |
Q |
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| T |
29711505 |
acacaatcttttgaaaccggatataactgataatgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcacaaacatctgagaaa |
29711406 |
T |
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| Q |
201 |
tatgtgaaatactacattatatgtatgtttatttgttccagtactgttataaatgtgttgttagtattgtgaaaagatagttgtg |
285 |
Q |
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| T |
29711405 |
tatgtgaaatactacattatatgtatgtttatttgttccagtactgttataaatgtgttgttattattgtgaaaagatagttgtg |
29711321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 29697238 - 29697418
Alignment:
| Q |
1 |
atcaaaatcccattctcatttcattaatcaaagaccaaatcagtcagagtaatacatactttgccaaactagttggaaaaacaggtataataacaatttc |
100 |
Q |
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||||||||| |||||||||||||| ||||||||||||| |||| ||||||||| | | ||||| |||| |||||| | |||| |||||||||||| |
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| T |
29697238 |
atcaaaatctcattctcatttcataaatcaaagaccaactcag----agtaatacacatcctaccaaattagtaggaaaa-cgggtacaataacaatttc |
29697332 |
T |
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| Q |
101 |
acacaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcac |
186 |
Q |
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| T |
29697333 |
acacaaccttttgaaaccggatataaacggtgattatcgaggttaccatttcatgagacaacaatagacgacactgtaaatctcac |
29697418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 101 - 250
Target Start/End: Original strand, 29689171 - 29689320
Alignment:
| Q |
101 |
acacaaccttttgaaaccggatataactgataacgaccgaggttaccatttcatgcaacaacgatagatgacactgcaaatctcacaaacatctgagaaa |
200 |
Q |
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||||||||||||||||||||||||||| | | | | |||||||||||||||||| ||||| ||||| ||||||||||||||||| | ||| || |||| |
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| T |
29689171 |
acacaaccttttgaaaccggatataaccggtgattatcgaggttaccatttcatgagacaacaatagacgacactgcaaatctcactatcatatgtgaaa |
29689270 |
T |
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| Q |
201 |
tatgtgaaatactacatta-tatgtatgtttatttgttccagtactgttat |
250 |
Q |
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| T |
29689271 |
cctgtgaaatact-cagtattatgtttgtttatttgtttgattactgttat |
29689320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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