View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_3 (Length: 582)
Name: NF11603_low_3
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 576
Target Start/End: Original strand, 41673884 - 41674440
Alignment:
| Q |
20 |
aatcccaaaatttacaagacaaatcaaggcagaatagtagaagcttgatgctgatcatattaatggagtattattcaacagaaggtaa-tatggttgtca |
118 |
Q |
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| T |
41673884 |
aatcccaaaatttacaagacaaatcaaggcagaatagtagaagcttgatgctgatcatattaatggagtattattcaacagaagataaatatggttgtca |
41673983 |
T |
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| Q |
119 |
tacctttttctggtagttttgtccaagttgctttacatctttgttagccaagtcaannnnnnnacgcaccattgcgacttccttcctcataggatcttcc |
218 |
Q |
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| T |
41673984 |
tacctttttctggtagttttgtccaagttgctttacatctttgttggccaagtcaatttttttacgcaccattgcgacttccttcctcataggatcttcc |
41674083 |
T |
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| Q |
219 |
atcacttcaagctcctagattatcattatacgacagaatgaatatgacattagtagttagcatagtcaataaaatttaatttcaataactgacgctttct |
318 |
Q |
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| T |
41674084 |
atcacttcaagctcctagattatcattatacgacagaatgaatatgacattagtagttagcatagtcaataaaatttaatttcaataactgacgctttct |
41674183 |
T |
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| Q |
319 |
actgtgaacaacatgggaataagaagtaattttgttcaagaaatgatagtcagcaaactagattggatgactaatattttaagttcggtaaatcaaactt |
418 |
Q |
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| T |
41674184 |
attctgaacaacatgggaataagaagtaattttgttcaagaaatgatagtcagcaaactagattggatgactaatattttaagttcggtaaatcaaactt |
41674283 |
T |
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| Q |
419 |
aaacgaagttaaaaaatatacttcaaatctaagttgtctgatctttatcgcgcaatcaaatttgttgaccgcgtgactgcatggatttcatcacatatgt |
518 |
Q |
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| T |
41674284 |
aaacgaagtt-aaaaatatacttcaaatctaagttgtctgatctttatcccgcaatcaaatttgttgaccacgtgactgcatggatttcatcacatatgt |
41674382 |
T |
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| Q |
519 |
tttttctaaacatggaacttacttcccaaatgtgagccaaacgccttgtctctgcttc |
576 |
Q |
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| T |
41674383 |
tttttctaaacatggaacttacttcccaaatgtgagccaaacgccttgtctcttcttc |
41674440 |
T |
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