View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11603_low_4 (Length: 565)
Name: NF11603_low_4
Description: NF11603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11603_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 3338707 - 3338164
Alignment:
| Q |
1 |
acatgtggtcagatgttcgattcctgattcatacgtgtgnnnnnnnttcgattaaaagaggagaattcatgcatcttatatgtccgagagattctcatat |
100 |
Q |
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| T |
3338707 |
acatgtggtcagatgttcgattcctgattcatacgtgtggaaaaaattcgattaaaagaggagaatctatgcatcttatgtgtccgagagattctcctat |
3338608 |
T |
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| Q |
101 |
gaaaattagtgatttgagaagggaggtatatattcaagttaactaaaggtggtgaaaggtagattaggtagaataagttcacatgataattgtcatttgt |
200 |
Q |
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| T |
3338607 |
gaaaattagtcatttgagaagggaggtatatattcaagttaactaaaggtggtgaaaggtaga---------ataagttcacatgataattgtcatttgt |
3338517 |
T |
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| Q |
201 |
caccctaattgagaaatgctttgaggataagacttggatttgaagtaagcacgcgtctaagaatctgacaaactcacacacatataatgaaatgaagagg |
300 |
Q |
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| T |
3338516 |
caccctaattgagaaatgatttgaggataagacttggatttgaagtaagcacgcgtctaagaatctgacaaactcacacacagataatgaaatgaagagg |
3338417 |
T |
|
| Q |
301 |
aggaggg-ttgtgggatccaccatgagtgcattggatggagcatannnnnnnnnnnn--gccgacaaagggcatctttggatgcatgggttttagtattt |
397 |
Q |
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| T |
3338416 |
aggaggggttgtggggtccaccatgagtgcattggatggagcataagagagagagagaggccgacaaagggcatctttggatgcatgggttttagtattt |
3338317 |
T |
|
| Q |
398 |
gcgcacgcacgggagttgttattctcaatatatatcaatgacttgtgattaatatcatattattatcactaattaattttaggtaggtttcagagatttc |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3338316 |
gcgcacgcacgggagttgttattctcaatatatatcaatgacttgtgattaatatcatattattatcactaattaattttaggtaggtttcagagatttc |
3338217 |
T |
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| Q |
498 |
agagtaattcagctaactcttcggtgctttccactgtctttttgtgatctctg |
550 |
Q |
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| T |
3338216 |
agagtaattcagctaactcttcggtgctttccactgtctttttgtgatctctg |
3338164 |
T |
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